Computational Biophysics Workshop - Boston, Dec. 5-9, 2004
Program
Location
The Colonnade Hotel in Boston
Sun, 12/5: Introduction to Protein
Structure and
Dynamics
Braemore/Kenmore Room
08:30-09:00
Breakfast
09:00-09:30
Opening Remarks
09:30-10:40
Molecular Graphics Perspective of Protein
Structure and
Function
Coffee Break
11:00-11:50
Molecular Dynamics Method
11:50-12:00
Daily Q & A
Lunch Break
14:00-14:45
Overview of Hands-on Sessions
15:00-15:30
Molecular Graphics Tutorial
Coffee Break
15:45-18:00
Molecular Graphics Tutorial (continued)
Mon, 12/6: Statistical Mechanics of Proteins
Braemore/Kenmore Room
08:30-09:00
Breakfast
09:00-10:00
Equilibrium Properties of Proteins
10:00-10:40
Nonequilibrium Properties of Proteins
Coffee Break
11:00-11:50
Simulated Cooling of Proteins
11:50-12:00
Daily Q & A
Lunch Break
14:00-15:30
Molecular Dynamics Tutorial
Coffee Break
15:45-18:00
Molecular Dynamics Tutorial
(continued)
Tue, 12/7: Introduction to Bioinformatics
Boston Ballroom
08:30-09:00
Breakfast
09:00-10:00
Introduction to Bioinformatics:
Sequence,
Structure, and Alignment
10:00-10:40
Evolutionary Concepts in
Bioinformatics
Coffee Break
11:00-11:50
Application of Bioinformatics
11:50-12:00
Daily Q & A
Lunch Break
14:00-15:30
Bioinformatics Study of Aquaporins
Coffee Break
15:45-16:00
Bioinformatics Study of Aquaporins
(continued)
16:00-18:00
Bioinformatics Study of Aminoacyl
tRNA
Synthetases
Wed, 12/8: Parameters for Classical Force Fields
Braemore/Kenmore Room
08:30-09:00
Breakfast
09:00-10:00
Introduction to Classical Force Fields
10:00-10:40
Force Fields Parameterization
Coffee Break
11:00-11:50
Applications
11:50-12:00
Daily Q&A
Lunch Break
14:00-15:30
Paramaterizing a Novel Residue
Coffee Break
15:45-18:00
Topology File Tutorial
Thu, 12/9: Simulating Membrane Channels
Braemore/Kenmore Room
08:30-09:00
Breakfast
09:00-10:00
Introduction and Examples
10:00-10:40
Transport in Aquaporins
Coffee Break
11:00-11:50
Nanotubes
11:50-12:00
Daily Q&A
Lunch Break
14:00-15:00
Nanotubes
15:00-15:30
Molecular Dynamics Tutorial
(continued)
Coffee Break
15:45-18:00
Molecular Dynamics Tutorial
(continued)
.