FileSpec struct Reference

Public Types

enum WaitFor { WAIT_ALL = -1, WAIT_BACK = 1 }

Public Methods

FileSpec ()

FileSpec (const FileSpec &s)

~FileSpec ()

Public Attributes

int autobonds

whether to allow automatic bond determination. More...

int filebonds

whether to honor bonds specified by the loaded file(s). More...

int first

first timestep to read/write. More...

int last

last timestep to read/write. More...

int stride

stride to take in reading/writing timesteps. More...

int waitfor

whether to wait for all timesteps before continuing. More...

int nvolsets

number of volume sets in list. More...

int * setids

list of volumesets to load/save. More...

int * selection

if non-NULL, flags for selected atoms to read/write. More...

enum FileSpec::WaitFor

Enumeration values:: WAIT_ALL Wait for all frames to load in foreground.

WAIT_BACK Proceed while frames load in background.

Definition at line 76 of file VMDApp.h.

Constructor & Destructor Documentation

FileSpec::FileSpec ( ) [inline]

Definition at line 90 of file VMDApp.h.

References autobonds, filebonds, first, last, NULL, nvolsets, selection, setids, stride, WAIT_BACK, and waitfor.

FileSpec::FileSpec ( const FileSpec & s ) [inline]

Definition at line 102 of file VMDApp.h.

References autobonds, filebonds, first, last, NULL, nvolsets, selection, setids, stride, and waitfor.

FileSpec::~FileSpec ( ) [inline]

Definition at line 122 of file VMDApp.h.

References setids.

Member Data Documentation

int FileSpec::autobonds

whether to allow automatic bond determination.

Definition at line 80 of file VMDApp.h.

Referenced by CmdMolLoad::create_text, FileSpec, colvarproxy_vmd::load_atoms, colvarproxy_vmd::load_coords, VMDApp::molecule_load, and text_cmd_mol.

int FileSpec::filebonds

whether to honor bonds specified by the loaded file(s).

Definition at line 81 of file VMDApp.h.

Referenced by FileSpec, VMDApp::molecule_load, and text_cmd_mol.

int FileSpec::first

first timestep to read/write.

Definition at line 82 of file VMDApp.h.

Referenced by access_tcl_atomsel, CmdMolLoad::create_text, SaveTrajectoryFltkMenu::do_save, FileSpec, VMDApp::molecule_load, VMDApp::molecule_savetrajectory, py_mol_read, py_mol_write, py_write, text_cmd_animate, and text_cmd_mol.

int FileSpec::last

last timestep to read/write.

Definition at line 83 of file VMDApp.h.

Referenced by access_tcl_atomsel, CmdMolLoad::create_text, SaveTrajectoryFltkMenu::do_save, FileSpec, VMDApp::molecule_load, VMDApp::molecule_savetrajectory, py_mol_read, py_mol_write, py_write, text_cmd_animate, and text_cmd_mol.

int FileSpec::nvolsets

number of volume sets in list.

Definition at line 86 of file VMDApp.h.

Referenced by CmdMolLoad::create_text, FileSpec, VMDApp::molecule_load, VMDApp::molecule_savetrajectory, py_mol_read, text_cmd_animate, text_cmd_mol, and VolMapCreateILS::write_map.

int* FileSpec::selection

if non-NULL, flags for selected atoms to read/write.

Definition at line 88 of file VMDApp.h.

Referenced by access_tcl_atomsel, SaveTrajectoryFltkMenu::do_save, FileSpec, VMDApp::molecule_savetrajectory, py_mol_write, py_write, and text_cmd_animate.

int* FileSpec::setids

list of volumesets to load/save.

Definition at line 87 of file VMDApp.h.

Referenced by CmdMolLoad::create_text, FileSpec, VMDApp::molecule_load, VMDApp::molecule_savetrajectory, py_mol_read, text_cmd_animate, text_cmd_mol, VolMapCreateILS::write_map, and ~FileSpec.

int FileSpec::stride

stride to take in reading/writing timesteps.

Definition at line 84 of file VMDApp.h.

Referenced by access_tcl_atomsel, CmdMolLoad::create_text, SaveTrajectoryFltkMenu::do_save, FileSpec, VMDApp::molecule_load, VMDApp::molecule_savetrajectory, py_mol_read, py_mol_write, py_write, text_cmd_animate, and text_cmd_mol.

int FileSpec::waitfor

whether to wait for all timesteps before continuing.

Definition at line 85 of file VMDApp.h.

Referenced by access_tcl_atomsel, CmdMolLoad::create_text, density_add, density_average, density_binmask, density_clamp, density_com, density_correlate, density_crop, density_downsample, density_histogram, density_info, density_mdff_potential, density_move, density_moveto, density_multiply, density_range, density_sadd, density_save, density_sigma, density_smooth, density_smult, density_subtract, density_supersample, density_trim, SaveTrajectoryFltkMenu::do_save, FileSpec, fit, mask, mdff_cc, VMDApp::molecule_load, VMDApp::molecule_savetrajectory, py_mol_load, py_mol_read, py_mol_write, py_write, text_cmd_animate, text_cmd_mol, and VMDreadStartup.

The documentation for this struct was generated from the following file:

VMDApp.h

FileSpec Struct Reference

Public Types

Public Methods

Public Attributes

Detailed Description

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Data Documentation