Gene/Sequence Resources

This resource allows you to retrieve sequences and analyze them using several sequence analysis tools. Select a sequence(s) by using one of the options on this page:

1. enter a gene or open reading frame name,

2a. specify a chromosomal region, or 2b. upload a list of chromosomal regions,

3. enter any raw DNA or protein sequence.

After submitting the form, you will be presented with options to download and/or analyze the sequences.

Note that this resource allows you to retrieve sequences using a single gene name, or using chromosomal or contig coordinates. To retrieve sequences and other information for multiple genes using a list of standard or systematic names (e.g., ACT1 or orf19.2203), please go to the Batch Download page.

1. Enter a Name
or the first few characters followed by *:

and Select:

Examples:
Gene - ACT1
ORF - orf19.2203
CGDID - CAL0001571

If available, add flanking basepairs
upstream and downstream

Use the reverse complement OR 2a. Pick a chromosome (or contig):

Then enter coordinates (optional):
to
Use the reverse complement

The first 100,000 basepairs of the chromosome or contig sequence will be retrieved if no coordinates are entered.

OR

2b. Upload a file of chromosome (or contig) regions to download genomic sequences in batch:

Use the reverse complement

Chromosome regions should be specified with the following tab or space separated columns:

(i) chromosome/contig, (ii) start_coordinate, (iii) stop_coordinate

The file should contain regions from a single genomic assembly (19, 20, or 21). Entering coordinates (in columns ii and iii) is optional. The first 100,000 basepairs of the chromosome or contig sequence will be retrieved if no coordinates are entered.

C. albicans SC5314 Assembly 21 example:
Ca21chr3_C_albicans_SC5314 1356 20455
Ca21chr4_C_albicans_SC5314 11331 18001
Ca21chr6_C_albicans_SC5314 9856 100010

C. albicans SC5314 Assembly 19 example:
Contig19-10109 4600 24000
Contig19-10216 200310 220546

C. glabrata CBS138 example:
ChrA_C_glabrata_CBS138 3210 4513
ChrJ_C_glabrata_CBS138 16899 17037
mito_C_glabrata_CBS138 10000 10897 OR 3. Type or Paste a
Sequence:

The sequence MUST be provided in RAW format, no comments (numbers are okay).

Use the reverse complement

Return to CGD

CGD Copyright © 2004-2025 The Board of Trustees, Leland Stanford Junior University.
Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
To cite CGD, please use the following reference: Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, Sherlock G (2017). The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Res 45 (D1); D592-D596; see How to cite CGD.