Cyanidioschyzon merolae Genome Project

Program blastn (NT query - NT database) blastp (AA query - AA database) blastx (translated NT query - AA database) tblastn (AA query - translated NT database) tblastx (translated NT query - translated NT database)
Database NCBI nr [May 1 2005] (AA database) NCBI nr + C. merolae (AA database) NCBI COG (AA database) NCBI KOG (AA database) KEGG GENES (AA database) annotated CDS (AA database) translated ORF (AA database) complete chromosomes (NT database) older chromosomal fragments (NT database) WGS reads (NT database) Phrap contigs (NT database) Arachne supercontigs (NT database) EST (NT database) EST forward (NT database) EST reverse (NT database) annotations (NT database) untranslated CDS (NT database) Calliarthron tuberculosum predicted proteins (Bhattacharya lab) Porphyridium cruentum EST unigene (Bhattacharya lab)

Enter here your input sequence in FASTA format

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The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect 1e-10 1e-4 1e-2(0.01) 1 100

Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes for blastx Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes for tblast[n/x] Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF

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Descriptions 0 10 50 100 250 500 Graphical Overview

Alignments 0 10 50 100 250 500
Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table
Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6