Module Biocaml_jaspar (.ml)

Access to Jaspar database

module Biocaml_jaspar:

sig

type collection =

| Core

| Phylofacts

| CNE

| PBM

| PBM_HOMEO

| PBM_HLH

| FAM

| SPLICE

| POLII

The possible kinds of motifs.

type motif = private {

id : string;

jaspar_id : string;

collection : collection ;

factor_name : string;

factor_class : string;

family : string option;

comment : string option;

medline : string;

matrix : int array array;

}

A Jaspar motif

val load  : string -> motif list

Loads a database in SQL dump format, as available at Jaspar website

end