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Series GSE202289 Query DataSets for GSE202289

Status Public on May 04, 2023

Title Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1

Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing

Summary This SuperSeries is composed of the SubSeries listed below.

Overall design Refer to individual Series

Citation missing Has this study been published? Please login to update or notify GEO.

Submission date May 05, 2022

Last update date May 07, 2023

Contact name Priyankara J Wickramasinghe

E-mail(s) priyaw@wistar.org

Phone 2154956837

Organization name The Wistar Institute

Department Bioinformatics

Lab Genomics

Street address 3601 Spruce Street

City Philadelphia

State/province PA

ZIP/Postal code 19104

Country USA

Platforms (2)

GPL19057 Illumina NextSeq 500 (Mus musculus)

GPL30172 NextSeq 2000 (Mus musculus)

Samples (88)

GSM6107676 B16.ctr.1

GSM6107677 B16.ctr.2

GSM6107678 B16.KO.1

GSM6107679 B16.KO.2

GSM6107680 Y21.EV.1

GSM6107681 Y21.EV.2

GSM6107682 Y21.WT.1

GSM6107683 Y21.WT.2

GSM6107684 Y21.bH.1

GSM6107685 Y21.bH.2

GSM6107686 Y21.KO.EV.1

GSM6107687 Y21.KO.EV.2

GSM6107688 Y21.KO.WT.1

GSM6107689 Y21.KO.WT.2

GSM6107690 Y21.KO.bH.1

GSM6107691 Y21.KO.bH.2

GSM6107692 Y17.EV.1

GSM6107693 Y17.EV.2

GSM6107694 Y17.WT.1

GSM6107695 Y17.WT.2

GSM6107696 Y17.bH.1

GSM6107697 Y17.bH.2

GSM6107698 Y21.EV.shNC.1

GSM6107699 Y21.EV.shNC.2

GSM6107700 Y21.EV.shM2.1

GSM6107701 Y21.EV.shM2.2

GSM6107702 Y21.EV.shM4.1

GSM6107703 Y21.EV.shM4.2

GSM6107704 Y21.WT.shNC.1

GSM6107705 Y21.WT.shNC.2

GSM6107706 Y21.WT.shM2.1

GSM6107707 Y21.WT.shM2.2

GSM6107708 Y21.WT.shM4.1

GSM6107709 Y21.WT.shM4.2

GSM6107710 Y21.dH.shNC.1

GSM6107711 Y21.dH.shNC.2

GSM6107712 Y21.dH.shM2.1

GSM6107713 Y21.dH.shM2.2

GSM6107714 Y21.dH.shM4.1

GSM6107715 Y21.dH.shM4.2

GSM6107846 Empty vector, 3 replicates (GE)

GSM6107847 Empty vector, 3 replicates (protein)

GSM6107848 Bmal1 WT, 3 replicates (GE)

GSM6107849 Bmal1 WT, 3 replicates (protein)

GSM6107850 Bmal1 bHLH, 3 replicates (GE)

GSM6107851 Bmal1 bHLH, 3 replicates (protein)

GSM6107852 IgG.EV.1

GSM6107853 IgG.EV.2

GSM6107854 H3K4me3.EV.1

GSM6107855 H3K4me3.EV.2

GSM6107856 H3K27me3.EV.1

GSM6107857 H3K27me3.EV.2

GSM6107858 IgG.WT.1

GSM6107859 IgG.WT.2

GSM6107860 H3K4me3.WT.1

GSM6107861 H3K4me3.WT.2

GSM6107862 H3K27me3.WT.1

GSM6107863 H3K27me3.WT.2

GSM6107864 IgG.bHLH.1

GSM6107865 IgG.bHLH.2

GSM6107866 H3K4me3.bHLH.1

GSM6107867 H3K4me3.bHLH.2

GSM6107868 H3K27me3.bHLH.1

GSM6107869 H3K27me3.bHLH.2

GSM6604055 IgG.EV.1 (H3K27ac control)

GSM6604056 IgG.EV.2 (H3K27ac control)

GSM6604057 H3K27ac.EV.1

GSM6604058 H3K27ac.EV.2

GSM6604059 IgG.WT.1 (H3K27ac control)

GSM6604060 IgG.WT.2 (H3K27ac control)

GSM6604061 H3K27ac.WT.1

GSM6604062 H3K27ac.WT.2

GSM6604063 IgG.bHLH.1 (H3K27ac control)

GSM6604064 IgG.bHLH.2 (H3K27ac control)

GSM6604065 H3K27ac.bHLH.1

GSM6604066 H3K27ac.bHLH.2

GSM6604067 IgG.shNC.1

GSM6604068 IgG.shNC.2

GSM6604069 H3K4me3.shNC.1

GSM6604070 H3K4me3.shNC.2

GSM6604071 H3K27ac.shNC.1

GSM6604072 H3K27ac.shNC.2

GSM6604073 IgG.shMyh9.1

GSM6604074 IgG.shMyh9.2

GSM6604075 H3K4me3.shMyh9.1

GSM6604076 H3K4me3.shMyh9.2

GSM6604077 H3K27ac.shMyh9.1

GSM6604078 H3K27ac.shMyh9.2

This SuperSeries is composed of the following SubSeries:

GSE202284 Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1 [RNA-Seq]

GSE202287 Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1 [scRNA-Seq]

GSE202288 Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1 [ChIP-Seq]

GSE214318 Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1 [ChIP-Seq II]

Relations

BioProject PRJNA835337

Download family Format

SOFT formatted family file(s) SOFT

MINiML formatted family file(s) MINiML

Series Matrix File(s) TXT

Supplementary file Size Download File type/resource

GSE202289_RAW.tar 9.6 Gb (http) (custom) TAR (of BW)

SRA Run Selector