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    Welcome to MaizeGDB!

    MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

    MaizeGDB is a founding member of AgBioData, a consortuim of agriculture-related online resources which is committed to making agriculture-related research data FAIR.

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    Maize Genetics Meeting

    The 68th Annual Maize Genetics Meeting will be held from February 26th - March 1st, 2026 at the Maritim Hotel, Cologne, Germany.

    The 67th Annual Maize Genetics Meeting was held from March 6th - 9th, 2025 at the Union Station, St. Louis, Missouri, USA.


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  • Genomes
    Representative genome - B73
    Zm-B73-REFERENCE-NAM-5.0
    Zm-B73-REFERENCE-GRAMENE-4.0
    B73 RefGen_v3
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    B73 RefGen_v1
    BAC-based B73

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    Zm-W22-REFERENCE-NRGENE-2.0
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    Whole genome views of B73 and NAM founders
    Karytypes of 14 inbred lines
    Karytypes of Mo17 and B73


    Complete collection of genome assemblies

  • Tools

    Featured tools at MaizeGDB

    A resource to BLAST your sequence against maize genomes and annotations.
    A data warehouse to access genomic, proteomic, and literature data for maize.
    A platform to compare gene and protein expression data across multiple genomes.
    A set of comprehensive metabolic pathway resources for maize.

    New tools at MaizeGDB


    Fusariuim Protein Toolkit
    A set of tools and datasets to explore the functions and structures of the Fusarium proteome.

    Phylostrata
    Phylostratigraphy determines the level of evolutionary conservation of a given protein.

    PanEffect
    PanEffect: A tool to explore the variant effects across the maize pan-genome.

    SNPversity 2.0
    A tool to access large-scale maize genetic variation data.

    Foldseek Search
    Fast comparisons of large protein structure sets.

    Other tools at MaizeGDB

    • SNPversity 2.0
    • SNPversity: A tool to access large-scale maize genetic variation data.
    • TYPSimSelector
    • TYPSimSelector: A tool that sorts identity-by-state values derived from SNP datasets for accessions in the Ames Diversity Panel (a USDA-maintained set of maize lines representing wide genetic variation in Ames, Iowa).
    • PanEffect
    • PanEffect: A tool to explore the variant effects across the maize pan-genome.
    • Bin viewer
    • Bin Viewer: A tool to explore data in regions defined by genetic bins.
    • GenomeQC
    • GenomeQC: A tool to assess the quality of genome assemblies and annotations.
    • Maize Feature Store
    • MFS: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications.
    • Pedigree Viewer
    • Pedigree Viewer: A tool to visualize maize pedigree data and networks.
    • PAST
    • PAST: A tool that assigns your SNPs to genes and your genes to metabolic pathways.
    • Genome Context Viewer
    • GCV: A web-app that visualizes genomic context data in a single, federated interface by using functional annotations as a unit of search and comparison.
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Home >Datacenter > References

References Data In MaizeGDB

Reference Research Tools

Editorial Board Picks These papers were selected by the MaizeGDB editorial board as papers of interest to maize researchers!


Maize Newsletters: An online archive of maize newsletters is available.


Simple Reference Search: Search hand-curated references at MaizeGDB. This search form allows you to just enter basic info (such as the last name of the primary author, or a portion of the title) to quickly retrieve the desired reference.


(see a sample reference search)

(upper limit on results is 2,000 records)

The above sample search would detect papers by Walbot discussing Mutator. Other interesting searches include Chandler transposable elements, sh1, or countless others.


This search can be executed on every page on the site with the search box the upper right corner. Choose "reference" from the drop-down menu, enter your search term in the field, and hit return to find the reference you're looking for.


PubMed Search: We spend time actively curating our references, relating them to author records and in many cases extracting data from the references. Thus, we may not have the most recent references for a given topic. If we don't have the reference(s) you are looking for, use PubMed's simple, keyword search (PubTator), or advanced search.

Reference Abstract Search: This search allows you to dig through the hand-curated reference abstracts for a particular set of terms you might be interested in; the search will find all of the papers with abstracts containing the terms. Try the sample search below to see the results one might get.


(see a sample reference abstract search)


Reference Advanced Search

Below, you can enter criteria for complex searches through the hand-curated references stored in MaizeGDB.


written by
written by
from (Tip: you can jump to the first letter by entering that in the box)
published in
with
recommended by an Editorial Board member
from

(upper limit on results is 2,000 records)

Discussion of Reference Data for the General Public


Reference data provides the background for much of the information stored in this site. References provide hard documentation for the facts presented here, and allow interested parties to dig deeper into a particular topic of interest. Most records on the site have linkages to reference data.



References at MaizeGDB
MaizeGDB maintains a set of hand-curated references. These include all papers recommended by the editoral board.

For a more thorough literature search, you can use the PubMed provided on the left, or try literature search engines such as Google Scholar.

If you wish to annotate a locus or gene model with your reference, please use the annotation tools on those pages. If we need to add your reference to MaizeGDB, please contact us.



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