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For general information see the Wikipedia page on file managers.
Graphical
Some graphical file managers available in Debian:
Name
Description
Package information
Project website
Caja
replaces Nautilus in MATE
https://github.com/mate-desktop/mate-wiki/blob/master/pages/applications-caja.md
gentoo
A lightweight and fast two-pane file manager (GTK-based)
Gnome Commander
advanced two-pane file manager developed for the GNOME desktop
File manager and web browser, formerly the standard in KDE
PCManFM
The standard file manager in LXDE, fast, lightweight and simple. Though it's a component of LXDE, it is actually desktop-independent.
The fast and lightweight file manager from Xfce
Xfe
Xfe is a small, fast and feature-rich desktop-independent file manager based on X Win Commander. It comes with an integrated text viewer, text editor, image viewer and package manager. Its GUI is similar to that of Windows Explorer.
Console
File managers that can be used in a command line interface environment.
mc - Midnight Commander - a powerful file manager
nnn - nnn is a full-featured terminal file manager, it's extremely light and fast.
ranger - Console File Manager with VI Key Bindings
External links
Comparison_of_file_managers - Wikipedia's Comparison of file managers page