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89
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Run R with cuBLAS backend on Ubuntu
I'm trying to follow this guide to have R exploit the cuBLAS BLAS library.
But I seem to fail: when I run sessionInfo(), it is still linked against the openBLAS package.
What am I doing wrong?
...
Advice
0
votes
1
replies
89
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BLAS speed much worse on one (supposedly heterogenous) compute node
We have a small local compute cluster consisting of 5 compute nodes (all supposedly having the same hardware and software) and a login/storage node. I'm running an in-house Fortran software that uses ...
1
vote
1
answer
85
views
OpenBLAS gemm 2x slower in Lisp CFFI compared to direct C calls with same BLAS library
I'm experiencing a significant performance difference where OpenBLAS matrix multiplication runs 2x slower when called through Lisp CFFI compared to direct C calls, despite using the exact same ...
3
votes
0
answers
103
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Making an R module linking OpenBLAS statically
I am trying to build an R module linking statically OpenBLAS:
mypkg/
├── DESCRIPTION
├── NAMESPACE
├── R/
│ ├── check_openblas.R
│ ├── my_interface.R
│ └── openblas_init.R
├── inst/
│ └── libs/...
4
votes
1
answer
239
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Loading SciPy offline using Pyodide
I wish to load SciPy on Pyodide without using a CDN.
For that, I installed the pyodide package using npm, and within a webworker I ran
pyodide.loadPackage('/wheels/scipy-1.14.1-cp313-cp313-...
2
votes
0
answers
111
views
Disable Numpy parallelization inside Numba JIT
The problem is illustrated by the following script, which works correctly if MKL is used for linear algebra operations:
from numba import njit, prange
from numpy import random, dot, empty
from ...
1
vote
1
answer
54
views
Reducing number of identical BLAS DLLs in pyinstaller generated distributable
I created an executable with pyinstaller and noticed that even after some size reduction tricks (creating a custom environment, using OpenBLAS instead of MKL) the package comes out quite big. When ...
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0
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63
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Undefined reference to BLAS
I'm trying to install the HurdleNormal R package as a dependency for another package (COZINE), and I'm getting the following error:
C:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe:
...
1
vote
0
answers
95
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Nonsensical fits from mgcv using `gam()` or `bam()`
I am getting nonsensical fits from both mgcv::gam() and mgcv::bam() whenever I use ML, REML, or fREML, despite clear trends in the test data. I believe the issues started after I installed openBLAS ...
0
votes
1
answer
1k
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Building scipy from source fails because "OpenBLAS" is not found
I'm trying to install SciPy, and it's building from source. However, this fails because of the error Dependency "OpenBLAS" not found, tried pkgconfig, framework and cmake.
Python version: 3....
0
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0
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49
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OpenBLAS and MKL give incosistent SVD decompositions?
I find that MKL and OpenBLAS give slightly different SVD decompositions.
I have this declaration of dgesvd,
extern "C" {
void dgesvd_(char const& jobu, char const& jobvt, int ...
-2
votes
1
answer
191
views
How can I use OpenBLAS with MathNet.Numerics?
I have installed OpenBLAS using conda on Windows.
My package.config is as follows:
<?xml version="1.0" encoding="utf-8"?>
<packages>
<package id="CUDAfy.NET&...
0
votes
3
answers
3k
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Python error trying to install gensim on MacOS
trying to install gensim on MacBook Pro (i7, Sonoma 14.7.1) using PyCharm ([email protected]). I've tried several suggestions from stack, github and other sources but none worked.
Based on what little I ...
1
vote
2
answers
133
views
Undefined reference to cblas_* with cmake on windows
I'working on a project that uses SAF (Spatial Audio Framework) which has OpenBlas and LAPACK as Dependecies. (The Project includes a lot of libraries so I only show the code that relates to my problem:...
1
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0
answers
48
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Confused about cblas_dgemm arguments
Say I want to calculate x^T * Y, x is an n by 1 matrix and Y is an n by n matrix:
cblas_dgemm(const enum CBLAS_ORDER Order, const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_TRANSPOSE TransB, const ...