matplotlib-users Mailing List for matplotlib

>>
>
> Samuel,
> Something must be wrong with your numpy installation: did you forget 
> to delete
> any previous installation of numpy before installing 1.1.0 ? There 
> shouldn't
> be any ma.py module in numpy.core. The masked array module now 
> resides in
> numpy.ma
>
That was it. I didn't realize I had to delete the old installation 
first.
After deleting everything with numpy init from /Library/Frameworks/ 
Python.framework/Versions/2.5/lib/python2.5/site-packages
 and reinstalling, all the tests past cleanly.
Thanks

On Saturday 07 June 2008 16:04:13 Samuel M. Smith wrote:
> Numpy is installed in /Library/Frameworks/Python.framework/Versions/
> 2.5/lib/python2.5/site-packages/numpy
> Numpy version 1.1.0
> /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-
> packages/numpy/core/ma.py:609: UserWarning: Cannot automatically
> convert masked array to numeric because data
> is masked in one or more locations.
> warnings.warn("Cannot automatically convert masked array to "\
Samuel,
Something must be wrong with your numpy installation: did you forget to delete 
any previous installation of numpy before installing 1.1.0 ? There shouldn't 
be any ma.py module in numpy.core. The masked array module now resides in 
numpy.ma
> FAIL: check_testUfuncRegression (numpy.core.tests.test_ma.TestUfuncs)
Same here: you shouldn't have a numpy.core.tests.test_ma file, but 
numpy.ma.tests.test_core.
Please try to reinstall numpy from scratch, or at least delete outdated files.

I installed numpy 1.10 from the package installer to OS X Leopard 
10.5.3.
It installs fine but I get and error (see below) when running the tests.
Does anyone else get this error? Is it fixed in the current svn version?
 >>> numpy.test()
Numpy is installed in /Library/Frameworks/Python.framework/Versions/ 
2.5/lib/python2.5/site-packages/numpy
Numpy version 1.1.0
Python version 2.5.2 (r252:60911, Feb 22 2008, 07:57:53) [GCC 4.0.1 
(Apple Computer, Inc. build 5363)]
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site- 
packages/numpy/core/ma.py:609: UserWarning: Cannot automatically 
convert masked array to numeric because data
 is masked in one or more locations.
 warnings.warn("Cannot automatically convert masked array to "\
FAIL: check_testUfuncRegression (numpy.core.tests.test_ma.TestUfuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
 File "/Library/Frameworks/Python.framework/Versions/2.5/lib/ 
python2.5/site-packages/numpy/core/tests/test_ma.py", line 692, in 
check_testUfuncRegression
 self.failUnless(eqmask(ur.mask, mr.mask))
AssertionError
----------------------------------------------------------------------
Ran 1319 tests in 2.475s
FAILED (failures=1)
<unittest._TextTestResult run=1319 errors=0 failures=1>

Thanks, I got confused by later posts in the same thread that only 
said to delete the work fat not the whole -macosx-10.3-fat
That still didn't work completely as the permissions were wrong after 
the install
in /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/ 
site-packages/matplotlib-0.98.0-py2.5.egg
drwx------ 10 root admin 340 Jun 7 14:20 matplotlib-0.98.0- 
py2.5.egg
after
 chmod ugo+rx matplotlib-0.98.0-py2.5.egg
then I could ipython --pylab successfully
Thanks
On 07 Jun 2008, at 15:09 , Jeff Whitaker wrote:
> Samuel M. Smith wrote:
>> I am a little confused. It seems the only ones having success
>> installing MPL on Leopard are those building from
>> source. Is this the recommended way to install. I couldn't get the 
>> egg
>> to install.
>>
>>
> Samuel: There was a recent message (pasted below) on the list from
> Vincent Noel that describes a workaround for the Leopard egg problem:
>
> "If you rename matplotlib-0.98.0-py2.5.egg to
> matplotlib-0.98.0-py2.5.egg,
> easy_install will install it from the disk.
>
> I'm not sure why this happens. I've noticed lots of Mac OS X eggs with
> cruft at the end of the
> filename, which prevents their installation through easy_install.
> Renaming is all it takes
> to install them; still, it's annoying."
>
> HTH,
>
> -Jeff
>
>
>
> -- 
> Jeffrey S. Whitaker Phone : (303)497-6313
> NOAA/OAR/CDC R/PSD1 FAX : (303)497-6449
> 325 Broadway Boulder, CO, USA 80305-3328
>
>
> -------------------------------------------------------------------------
> Check out the new SourceForge.net Marketplace.
> It's the best place to buy or sell services for
> just about anything Open Source.
> http://sourceforge.net/services/buy/index.php
> _______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
**********************************************************************
Samuel M. Smith Ph.D.
2966 Fort Hill Road
Eagle Mountain, Utah 84005-4108
801-768-2768 voice
801-768-2769 fax
**********************************************************************
"The greatest source of failure and unhappiness in the world is
giving up what we want most for what we want at the moment"
**********************************************************************

I renamed the egg on sf to "matplotlib-0.98.0-py2.5-macosx-10.3.egg". For
me, setuptools does not try to download the source after installing now.
Unfortunately when I try, "easy_install matplotlib", it still starts
downloading the source instead of the osx binary. I am not having luck
finding docs on this.
- Charlie
On Sat, Jun 7, 2008 at 3:09 PM, Jeff Whitaker <js...@fa...> wrote:
> Samuel M. Smith wrote:
> > I am a little confused. It seems the only ones having success
> > installing MPL on Leopard are those building from
> > source. Is this the recommended way to install. I couldn't get the egg
> > to install.
> >
> >
> Samuel: There was a recent message (pasted below) on the list from
> Vincent Noel that describes a workaround for the Leopard egg problem:
>
> "If you rename matplotlib-0.98.0-py2.5-macosx-10.3-fat.egg to
> matplotlib-0.98.0-py2.5.egg,
> easy_install will install it from the disk.
>
> I'm not sure why this happens. I've noticed lots of Mac OS X eggs with
> cruft at the end of the
> filename, which prevents their installation through easy_install.
> Renaming is all it takes
> to install them; still, it's annoying."
>
> HTH,
>
> -Jeff
>
>
>
> --
> Jeffrey S. Whitaker Phone : (303)497-6313
> NOAA/OAR/CDC R/PSD1 FAX : (303)497-6449
> 325 Broadway Boulder, CO, USA 80305-3328
>
>
> -------------------------------------------------------------------------
> Check out the new SourceForge.net Marketplace.
> It's the best place to buy or sell services for
> just about anything Open Source.
> http://sourceforge.net/services/buy/index.php
> _______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
>

Samuel M. Smith wrote:
> I am a little confused. It seems the only ones having success 
> installing MPL on Leopard are those building from
> source. Is this the recommended way to install. I couldn't get the egg 
> to install.
>
> 
Samuel: There was a recent message (pasted below) on the list from 
Vincent Noel that describes a workaround for the Leopard egg problem:
"If you rename matplotlib-0.98.0-py2.5-macosx-10.3-fat.egg to
matplotlib-0.98.0-py2.5.egg,
easy_install will install it from the disk.
I'm not sure why this happens. I've noticed lots of Mac OS X eggs with
cruft at the end of the
filename, which prevents their installation through easy_install.
Renaming is all it takes
to install them; still, it's annoying."
HTH,
-Jeff
-- 
Jeffrey S. Whitaker Phone : (303)497-6313
NOAA/OAR/CDC R/PSD1 FAX : (303)497-6449
325 Broadway Boulder, CO, USA 80305-3328

I am a little confused. It seems the only ones having success 
installing MPL on Leopard are those building from
source. Is this the recommended way to install. I couldn't get the egg 
to install.
**********************************************************************
Samuel M. Smith Ph.D.
2966 Fort Hill Road
Eagle Mountain, Utah 84005-4108
801-768-2768 voice
801-768-2769 fax
**********************************************************************
"The greatest source of failure and unhappiness in the world is
giving up what we want most for what we want at the moment"
**********************************************************************

I am having problems installing on Leopard.
It is not clear what your are renaming and to what.
I download a zip file
matplotlib-0.98.0-py2.5-macosx-10.3-fat.egg.zip
This extracts to a directory named
matplotlib-0.98.0-py2.5-macosx-10.3-fat.egg
Do I rename this directory and remove -fat from the name so it is
matplotlib-0.98.0-py2.5-macosx-10.3.egg
I tried this but it didn't work
sudo easy_install /Volumes/Aux/ServerSync/Install/Python/MacPython/ 
Python2.5.x/Matplotlib/matplotlib-0.98.0-py2.5-macosx-10.3.egg
Password:
Processing matplotlib-0.98.0-py2.5-macosx-10.3.egg
Copying matplotlib-0.98.0-py2.5-macosx-10.3.egg to /Library/Frameworks/ 
Python.framework/Versions/2.5/lib/python2.5/site-packages
Adding matplotlib 0.98.0 to easy-install.pth file
Installed /Library/Frameworks/Python.framework/Versions/2.5/lib/ 
python2.5/site-packages/matplotlib-0.98.0-py2.5-macosx-10.3.egg
Processing dependencies for matplotlib==0.98.0
Searching for matplotlib==0.98.0
Reading http://pypi.python.org/simple/matplotlib/
Reading http://matplotlib.sourceforge.net
Reading https://sourceforge.net/project/showfiles.php?group_id=80706&package_id=82474
Reading https://sourceforge.net/project/showfiles.php?group_id=80706&package_id=278194
Reading http://sourceforge.net/project/showfiles.php?group_id=80706&package_id=82474
Reading http://sourceforge.net/project/showfiles.php?group_id=80706
Best match: matplotlib 0.98.0
Downloading http://downloads.sourceforge.net/matplotlib/matplotlib-0.98.0.tar.gz?modtime=1212104461&big_mirror=0
Processing matplotlib-0.98.0.tar.gz
Running matplotlib-0.98.0/setup.py -q bdist_egg --dist-dir /tmp/ 
easy_install-ELrNzS/matplotlib-0.98.0/egg-dist-tmp-Yaf5pv
= 
= 
= 
= 
========================================================================
BUILDING MATPLOTLIB
 matplotlib: 0.98.0
 python: 2.5.2 (r252:60911, Feb 22 2008, 07:57:53) [GCC
 4.0.1 (Apple Computer, Inc. build 5363)]
 platform: darwin
REQUIRED DEPENDENCIES
 numpy: 1.1.0
 freetype2: 9.16.3
OPTIONAL BACKEND DEPENDENCIES
 libpng: 1.2.25
 Tkinter: Tkinter: 50704, Tk: 8.4, Tcl: 8.4
 wxPython: 2.8.7.1
 * WxAgg extension not required for wxPython 
 >= 2.8
 Gtk+: no
 * Building for Gtk+ requires pygtk; you must 
be able
 * to "import gtk" in your build/install 
environment
 Qt: no
 Qt4: no
 Cairo: no
OPTIONAL DATE/TIMEZONE DEPENDENCIES
 datetime: present, version unknown
 dateutil: 1.4
 pytz: 2007k
OPTIONAL USETEX DEPENDENCIES
 dvipng: 1.9
 ghostscript: 8.61
 latex: 3.141592
 pdftops: 3.02
EXPERIMENTAL CONFIG PACKAGE DEPENDENCIES
 configobj: matplotlib will provide
 enthought.traits: matplotlib will provide
[Edit setup.cfg to suppress the above messages]
= 
= 
= 
= 
========================================================================
warning: no files found matching 'NUMARRAY_ISSUES'
warning: no files found matching 'MANIFEST'
warning: no files found matching 'matplotlibrc'
warning: no files found matching 'makeswig.py'
warning: no files found matching 'lib/mpl_toolkits'
no previously-included directories found matching 'examples/_tmp_*'
warning: no files found matching '*' under directory 'swig'
In file included from /usr/include/math.h:26,
 from /Library/Frameworks/Python.framework/Versions/ 
2.5/include/python2.5/pyport.h:231,
 from /Library/Frameworks/Python.framework/Versions/ 
2.5/include/python2.5/Python.h:57,
 from ./CXX/WrapPython.h:42,
 from CXX/cxxextensions.c:38:
/usr/include/architecture/ppc/math.h:675: warning: conflicting types 
for built-in function ‘scalb’
ld: warning in /opt/local/lib/libfreetype.dylib, file is not of 
required architecture
ld: warning in /opt/local/lib/libz.dylib, file is not of required 
architecture
ld: in /opt/local/lib/libJPEG.dylib, file is not of required 
architecture for architecture ppc
collect2: ld returned 1 exit status
ld: warning, duplicate dylib /opt/local/lib/libz.1.dylib
lipo: can't open input file: /var/tmp//ccWbB6PA.out (No such file or 
directory)
error: Setup script exited with error: command 'g++' failed with exit 
status 1
Exception exceptions.OSError: (2, 'No such file or directory', 'src/ 
image.cpp') in <bound method CleanUpFile.__del__ of 
<setupext.CleanUpFile instance at 0x6227878>> ignored
Exception exceptions.OSError: (2, 'No such file or directory', 'src/ 
path.cpp') in <bound method CleanUpFile.__del__ of 
<setupext.CleanUpFile instance at 0x62270f8>> ignored
Exception exceptions.OSError: (2, 'No such file or directory', 'src/ 
backend_agg.cpp') in <bound method CleanUpFile.__del__ of 
<setupext.CleanUpFile instance at 0x6227468>> ignored
On 06 Jun 2008, at 03:07 , Andrew Charles wrote:
> I had this problem too, on Leopard. Trying to easy_install the egg
> named as downloaded from sourceforge results in stuff being downloaded
> and failing to build.
>
> Renaming the egg as suggested by Vincent results in an 'easy install'.
>
> -------------------------
> Andrew Charles
> Centre for Australian Weather and Climate,
> Australian Bureau of Meteorology.
> Condensed Matter Theory Group,
> RMIT University.
>
> -------------------------------------------------------------------------
> Check out the new SourceForge.net Marketplace.
> It's the best place to buy or sell services for
> just about anything Open Source.
> http://sourceforge.net/services/buy/index.php
> _______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
**********************************************************************
Samuel M. Smith Ph.D.
2966 Fort Hill Road
Eagle Mountain, Utah 84005-4108
801-768-2768 voice
801-768-2769 fax
**********************************************************************
"The greatest source of failure and unhappiness in the world is
giving up what we want most for what we want at the moment"
**********************************************************************