matplotlib-users Mailing List for matplotlib

hi all,
i am trying to plot a series of arrows between points on a scatter
plot, using the following code:
import matplotlib.pyplot as plt
from matplotlib.patches import FancyArrowPatch
from numpy import *
from scipy import *
def plot_arrows(init_val, all_vals, c='k'):
 plt.figure()
 ax = plt.gca()
 prev_val = init_val
 for x, y in all_vals[1:]:
 ax = plt.gca()
 start_coord = prev_val
 plt.scatter(start_coord[0], start_coord[1], c=c)
 end_coord = (x, y)
 ax.add_patch(FancyArrowPatch(start_coord, end_coord,
 arrowstyle='->', edgecolor=c,
facecolor=c, mutation_scale=10))
 prev_val = end_coord
 plt.scatter(all_vals[-1][0], all_vals[-1][1], c=c)
points = rand(5,2)
init = [0, 0]
plot_arrows(init, points)
plt.show()
this usually works, but sometimes when i give it a set of points (not
necessarily ones generated randomly), then it gives me the error:
Library/Python/2.5/site-packages/matplotlib/bezier.pyc in
split_path_inout(path, inside, tolerence, reorder_inout)
 265
 266 if bezier_path is None:
--> 267 raise ValueError("The path does not seem to intersect
with the patch")
 268
 269 bp = zip(bezier_path[::2], bezier_path[1::2])
ValueError: The path does not seem to intersect with the patch
any idea what could be causing this? it seems like any arbitrary set
of points should work here, since you can always draw an arrow between
any two points.... not sure what is the root of this error. any help
would be really appreciated. thank you.

Hi,
I know about sharing an axis with another subplot, but
is it possible to share the x-axis with another subplot's
y-axis (or the other way around)?
Thanks.
Ernest

Greetings,
I am using matplotlib to generate an SVG plot containing a mixture of
Annotations and Circles. I noticed that the annotation text does not appear
at exactly the correct location when outputting to SVG. The difference is
minor, but definitely present.
The following will reproduce the problem in the form of two files, an svg
and a png:
------
from matplotlib.pyplot import figure
from matplotlib.text import Annotation
from matplotlib.patches import Circle
from matplotlib.transforms import IdentityTransform
f = figure(1)
a = f.add_subplot(111)
text = Annotation('H', (0.4, 0.4), va='center', ha='center',
size='xx-large', transform=IdentityTransform())
a.add_artist(text)
a.grid(True)
f.savefig("incorrect.svg")
f.savefig("correct.png")
------
IdentityTransform() is used to workaround a bug in add_artist() (see
http://www.nabble.com/Annotation-add_artist-bug-tt19052971.html )
Further investigation reveals that this problem occurs with ps and pdf
output as well. It seems that all backend_*.py files in
/usr/share/pyshared/matplotlib/backends suffer from this problem. I have
poked around in a few files but can't see any obvious fixes.
Has anyone encountered this problem before and found a decent workaround?
Thanks,
Craig

On Sun, Oct 25, 2009 at 7:30 PM, George Nurser <gn...@go...> wrote:
> it seems a pity that
> fig.add_axes can't accept the transform directly.
While this is certainly possible, but it is a bit tricky to get it
correct due to the underlying design of the matplotlib. On the other
hand, I think it solves some problems, but not all. And the
axes_locator attribute in the current matplotlib is an attempt for a
more general solution.
For example, what you want can be achieved with something like below.
from mpl_toolkits.axes_grid.inset_locator import InsetPosition
ax= subplot(111)
ax2=axes([0, 0, 0, 0]) # The initial value is ignored in this example
ax2.set_axes_locator(InsetPosition(ax, [0.2, 0.2, 0.4, 0.4]))
Regards,
-JJ

This is a known bug. While this is fixed in the svn, this did go into
the maint. branch.
As a workaround, add the following line after line 70.
 self.legend.set_axes(self.subplot)
Regards,
-JJ
On Mon, Oct 26, 2009 at 9:44 AM, Andrea Gavana <and...@gm...> wrote:
> Hi All,
>
>  a while ago, Che posted a nice example on how to drag a legend
> with the mouse. I have upgraded to matplotlib 0.99.1 and it looks like
> the nice example is not working anymore: for the life of me I can't
> figure out what's wrong. I attach the runnable sample submitted
> originally.
>
> Any suggestion regarding what's wrong with the code?
>
> Thank you in advance.
>
> Andrea.
>
> "Imagination Is The Only Weapon In The War Against Reality."
> http://xoomer.alice.it/infinity77/
> http://thedoomedcity.blogspot.com/
>
> ------------------------------------------------------------------------------
> Come build with us! The BlackBerry(R) Developer Conference in SF, CA
> is the only developer event you need to attend this year. Jumpstart your
> developing skills, take BlackBerry mobile applications to market and stay
> ahead of the curve. Join us from November 9 - 12, 2009. Register now!
> http://p.sf.net/sfu/devconference
> _______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
>
>

> From: Werner F. Bruhin [mailto:wer...@fr...] 
> Sent: Saturday, October 24, 2009 09:03
> 
> I got it working by adding "C:\Python25" to the path 
> environment variable. Works but smells very much like a work around.
I'm glad you got things working. For what it's worth, my path contains not
only C:\Python25 but also C:\Python25\Scripts and several other
subdirectories; I don't recall adding them to the path myself, so I suspect
that python(x,y) did so during installation.

> From: Werner F. Bruhin [mailto:wer...@fr...] 
> Sent: Saturday, October 24, 2009 06:23
> 
> Installed Py 2.6.3 and I don't see the issue there, but not 
> all libraries I use are on 2.6 yet.
> 
> So, I thought lets install Python(x, y) and give this a try, 
> but I can't find a Python 2.5.x version of it - is this still 
> available?
Apparently: From the download page for python(x,y)
(http://www.pythonxy.com/download.php), in the "Site" column, the "Mirror 1"
link (http://ftp.ntua.gr/pub/devel/pythonxy/) took me to four releases of
python(x,y), of which two contain Python 2.5.something.

Hi, I'm hoping you can help. I've been reading through the matplotlib
documentation but finding it fairly confusing.
I am plotting some pie and bar charts, example code would be similar to,
def makepie(labels,slices,titlestring,outputname,FIGUREID,FIGSIZE):
	colorrange=[]
	for c in range(0,len(labels)):
		colorrange.append(( 0.5 ,0.5,0.5+(c*(0.5/len(labels)))))
	figure=plt.figure(FIGUREID, figsize=FIGSIZE)
	axes=figure.add_axes([0.1,0.1,0.8,0.8])
	chart=plt.pie(slices,labels=labels, shadow=True, colors=colorrange)
	#update formatting
	for pieslice in chart[1]: #0 is patches, 1 is text instances
		pieslice.set_fontname('Arial')
		pieslice.set_fontsize(6)
	figure.get_axes()[0].set_title(titlestring, bbox={'facecolor':'0.75',
'pad':6}, fontsize='x-small')
	plt.savefig(outputname)
The trouble is, the resulting pie isn't so pretty, and example is
http://www.nabble.com/file/p26060403/client_by_migtime.png 
I would like some general examples for updating the formatting - for example 
no matter what I have tried so far I cannot get the background to be
transparent rather than white, I dont really understand how to adjust the
positions of the labels and what options I have with the pie chart for doing
that.
I did figure out the font size and type changes, but that was more a shot in
the dark - I dont really understand the object I have programmatically or
the 'model' behind matplotlib and how it constructs an image.
I understand this is a slightly vague question, but hope someone can help!
Thanks,
Matt.
-- 
View this message in context: http://www.nabble.com/General-formatting-question-for-Pie---Bar-charts-tp26060403p26060403.html
Sent from the matplotlib - users mailing list archive at Nabble.com.

Hi All,
 a while ago, Che posted a nice example on how to drag a legend
with the mouse. I have upgraded to matplotlib 0.99.1 and it looks like
the nice example is not working anymore: for the life of me I can't
figure out what's wrong. I attach the runnable sample submitted
originally.
Any suggestion regarding what's wrong with the code?
Thank you in advance.
Andrea.
"Imagination Is The Only Weapon In The War Against Reality."
http://xoomer.alice.it/infinity77/
http://thedoomedcity.blogspot.com/

I'm not aware of anyone trying this, but I suspect it's related to 
differences in how DLL paths are searched on Windows vs. shared objects 
on Linux.
This sort of seems like a lower-level Python issue -- I wonder if you 
could find other projects that do this and see where matplotlib 
differs. For instance, can you import numpy this way? If not, I would 
bring this up on the Python users list and see if they have any advice.
Mike
Nick Hilton wrote:
> Hello all,
>
> I am trying to plot things from C using pylab. The configuration:
>
> Window XP 32 bits
> Python-2.6.3
> numpy-1.3.0
> matplotlib-0.99.1.
>
> I can easily do this on Linux, but the same code does not work on Windows. Here is a test program that tries to import pylab:
>
> #include <stdio.h>
>
> #include <Python.h>
>
>
>
> int main(void)
>
> {
>
> PyObject * module = NULL;
>
>
>
> Py_Initialize();
>
>
>
> module = PyImport_ImportModule("matplotlib.pylab");
>
>
>
> if(module == NULL || module == Py_None)
>
> {
>
> printf("no\n");
>
> PyErr_Print();
>
> PyErr_Clear();
>
> }
>
> else
>
> {
>
> printf("yes\n");
>
> }
>
>
>
> Py_Finalize();
>
>
>
> return 0;
>
> }
>
> The code above works fine with Python2.6 and Linux. However, on Windows it fails; here is the output:
>
> no
>
> Traceback (most recent call last):
>
> File "C:\Python26\lib\site-packages\matplotlib\pylab.py", line 206, in <module>
>
> from matplotlib import mpl # pulls in most modules
>
> File "C:\Python26\lib\site-packages\matplotlib\mpl.py", line 1, in <module>
>
> from matplotlib import artist
>
> File "C:\Python26\lib\site-packages\matplotlib\artist.py", line 5, in <module>
>
> from transforms import Bbox, IdentityTransform, TransformedBbox, TransformedPath
>
> File "C:\Python26\lib\site-packages\matplotlib\transforms.py", line 34, in <module>
>
> from matplotlib._path import affine_transform
>
> ImportError: DLL load failed: The specified module could not be found.
>
> Has anybody tried this?
>
> Thanks!
> Nick
>
>
>
> 
>
> ------------------------------------------------------------------------------
> Come build with us! The BlackBerry(R) Developer Conference in SF, CA
> is the only developer event you need to attend this year. Jumpstart your
> developing skills, take BlackBerry mobile applications to market and stay 
> ahead of the curve. Join us from November 9 - 12, 2009. Register now!
> http://p.sf.net/sfu/devconference
> _______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
> 
-- 
Michael Droettboom
Science Software Branch
Operations and Engineering Division
Space Telescope Science Institute
Operated by AURA for NASA

Jeff Whitaker wrote:
> kkondo wrote:
> 
>> Hello
>>
>> I want to get the shoreline of Malaren lake as 
>> http://en.wikipedia.org/wiki/File:La3-demis-malaren.png. But I find 
>> that the following Matplotlib-Basemap program does not draw its 
>> shoreline but its islands. Is it the flaw of GSHHS?
>>
>>
>> from mpl_toolkits.basemap import Basemap
>> import matplotlib.pyplot as plt
>> m = Basemap(width=180000,height=90000,
>> resolution='f',projection='tmerc',lon_0=17.5,lat_0=59.5)
>> plt.clf()
>> m.drawcoastlines()
>> m.fillcontinents(color='coral',lake_color='aqua')
>> m.drawmapboundary(fill_color='aqua')
>> m.drawrivers(color='b')
>> plt.show()
>>
>>
>> Sincerely,
>> Kentaro Kondo
>>
>>
>> 
> Kentaro: Apparently it's a flaw in GSHHS. I tried the online line map 
> creator at http://www.aquarius.geomar.de/cgi-bin/map-cgi.pl (which uses 
> GMT, which is the source of GSSHS) and got the same thing. It's 
> possible that it's fixed in the latest version of GSHHS (1.10) - I'll 
> take a look and let you know.
>
> -Jeff
> 
Kentaro: The problem still exists in GSHHS 1.10. I don't know what to 
suggest other than using a shapefile to plot the lakes in that region, 
if you can find one.
-Jeff

kkondo wrote:
> Dear Jeff
>
> Thank you for your reply.
>
> I have found that the "resolution='f'" in basemap crashes when drawing
> the Japanese Isles. Is it another flaw in GSHHS?
>
Kentaro: I cannot reproduce this crash. What version of the GEOS library
do you have? I am using 3.1.1.
-Jeff
P.S. cc'ing the matplotlib mailing list.
> % python japanese_isles.py
> GEOS_ERROR: TopologyException: side location conflict
> (130.468,32.5594,32.5594)
> Bus error
> % cat japanese_isles.py
> from mpl_toolkits.basemap import Basemap
> import matplotlib.pyplot as plt
> m = Basemap(llcrnrlon=121.,llcrnrlat=23.,urcrnrlon=152.,urcrnrlat=48.,
> resolution='f',projection='tmerc',lon_0=135.,lat_0=35.)
> m.drawcoastlines()
> plt.show()
> $ python
> Python 2.5.2 (r252:60911, Feb 22 2008, 07:57:53)
> [GCC 4.0.1 (Apple Computer, Inc. build 5363)] on darwin
> Type "help", "copyright", "credits" or "license" for more information.
> >>> import numpy
> >>> numpy.__version__
> '1.3.0'
> >>> import mpl_toolkits.basemap
> >>> mpl_toolkits.basemap.__version__
> '0.99.4'
>
> P.S. "resolution='f'" works fine for the British Isles:
> m = Basemap(llcrnrlon=-10.5,llcrnrlat=49.5,urcrnrlon=3.5,urcrnrlat=59.5,
> resolution='f',projection='tmerc',lon_0=-4.36,lat_0=54.7)
>
> Sincerely,
> Kentaro Kondo
>
>
> On 2009年10月25日, at 22:40, Jeff Whitaker wrote:
>
>> kkondo wrote:
>>> Hello
>>>
>>> I want to get the shoreline of Malaren lake as
>>> http://en.wikipedia.org/wiki/File:La3-demis-malaren.png. But I find
>>> that the following Matplotlib-Basemap program does not draw its
>>> shoreline but its islands. Is it the flaw of GSHHS?
>>>
>>>
>>> from mpl_toolkits.basemap import Basemap
>>> import matplotlib.pyplot as plt
>>> m = Basemap(width=180000,height=90000,
>>> resolution='f',projection='tmerc',lon_0=17.5,lat_0=59.5)
>>> plt.clf()
>>> m.drawcoastlines()
>>> m.fillcontinents(color='coral',lake_color='aqua')
>>> m.drawmapboundary(fill_color='aqua')
>>> m.drawrivers(color='b')
>>> plt.show()
>>>
>>>
>>> Sincerely,
>>> Kentaro Kondo
>>>
>>>
>> Kentaro: Apparently it's a flaw in GSHHS. I tried the online line map
>> creator at http://www.aquarius.geomar.de/cgi-bin/map-cgi.pl (which
>> uses GMT, which is the source of GSSHS) and got the same thing. It's
>> possible that it's fixed in the latest version of GSHHS (1.10) - I'll
>> take a look and let you know.
>>
>> -Jeff
>
> ---------------------------------------------------------------
> 富士通(株)
> 次世代IT・ITSプロジェクト室
> インフラ協調プロジェクト
> 近藤 kk...@jp...
> (044)754-8513 fax (044)754-3292
> 〒211-8588 神奈川県川崎市中原区上小田中4-1-1
>

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 <MATCHING_FILE NAME="kernel32.dll" SIZE="995840" CHECKSUM="0xC3003E57" BIN_FILE_VERSION="5.1.2600.5781" BIN_PRODUCT_VERSION="5.1.2600.5781" PRODUCT_VERSION="5.1.2600.5781" FILE_DESCRIPTION="Библиотека клиента Windows NT BASE API" COMPANY_NAME="Корпорация Майкрософт" PRODUCT_NAME="Операционная система Microsoft® Windows®" FILE_VERSION="5.1.2600.5781 (xpsp_sp3_gdr.090321-1317)" ORIGINAL_FILENAME="kernel32" INTERNAL_NAME="kernel32" LEGAL_COPYRIGHT="© Корпорация Майкрософт. Все права защищены." VERFILEDATEHI="0x0" VERFILEDATELO="0x0" VERFILEOS="0x40004" VERFILETYPE="0x2" MODULE_TYPE="WIN32" PE_CHECKSUM="0xF731E" LINKER_VERSION="0x50001" UPTO_BIN_FILE_VERSION="5.1.2600.5781" UPTO_BIN_PRODUCT_VERSION="5.1.2600.5781" LINK_DATE="03/21/2009 14:09:06" UPTO_LINK_DATE="03/21/2009 14:09:06" VER_LANGUAGE="Русский [0x419]" />
</EXE>
</DATABASE>
 ठ