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Showing 16 results of 16

From: Gruel B. <b....@wo...> - 2011年05月13日 22:12:14
Hello,
I'm a new matplotlib user and i have some question on embeded mpl into WxPython app. It's true that i a lot of doc but i don't find my solution (my poor english it's maybe for somethings).
My problem is not to how to embeded it but how customize customize my y axe whit barh chart.
Whit pylab i can do this't
pylab.yticks(pos, testNames)
But how can i do this when i work with wx. 
This a part off my code :
def draw_figure(self):
 self.axes.clear()
 self.axes.grid(True)
 
 
 self.axes.barh([1], 10, 0.2, 4, align='center')
 self.axes.barh([2], 4, 0.2, 2, align='center')
 self.axes.barh([3], 0.5, 0.2, 0.2, align='center')
 self.axes.yaxis.set_label_text("Grp de sauvegarde")
 
 self.axes.set_yticklabels(('G1', 'G2', 'G3'))
 for i in dir(self.axes):
 print i
 
 self.canvas.draw()
 
Thank's
Bruno
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From: Eric F. <ef...@ha...> - 2011年05月13日 18:43:12
On 05/13/2011 05:19 AM, Johannes Radinger wrote:
>
> -------- Original-Nachricht --------
>> Datum: 2011年5月13日 10:58:15 -0400
>> Von: Michael Droettboom<md...@st...>
>> An: mat...@li...
>> Betreff: Re: [Matplotlib-users] eps output and fill_between
>
>> Running it through gs (ghostscript) gives this error:
>>
>> =====
>>
>> GPL Ghostscript 8.70 (2009年07月31日)
>> Copyright (C) 2009 Artifex Software, Inc. All rights reserved.
>> This software comes with NO WARRANTY: see the file PUBLIC for details.
>> Error: /stackoverflow in -file-
>> Operand stack:
>> --nostringval--
>> Execution stack:
>> %interp_exit .runexec2 --nostringval-- --nostringval--
>> --nostringval-- 2 %stopped_push --nostringval--
>> --nostringval-- --nostringval-- false 1 %stopped_push 1846
>> 1 3 %oparray_pop 1845 1 3 %oparray_pop --nostringval--
>> 1829 1 3 %oparray_pop 1723 1 3 %oparray_pop
>> --nostringval-- %errorexec_pop .runexec2 --nostringval--
>> --nostringval-- --nostringval-- 2 %stopped_push
>> Dictionary stack:
>> --dict:1148/1684(ro)(G)-- --dict:0/20(G)-- --dict:75/200(L)--
>> --dict:7/8(L)--
>> Current allocation mode is local
>> Current file position is 675310
>> GPL Ghostscript 8.70: Unrecoverable error, exit code 1
>>
>> =====
>>
>> This indicates that the Postscript is running out of stack space
>> (memory). Indeed, the file has a very large path in it.
>>
>> A little background: matplotlib includes an algorithm to "simplify"
>> really long paths by removing points that don't actually contribute to
>> the resulting image. Unfortunately, this algorithm only works for
>> unfilled paths -- dealing with the more general case of filled paths is
>> more difficult. That's why you only see this problem when using
>> "fill_between" and not just when plotting lines.
>>
>> The problem here is that it's hard to trap for this error -- the size of
>> the Postscript stack is dependent on the Postscript interpreter being
>> used, so what works in one place may not in another.
>>
>> A simple way around this is to just decimate the data, i.e.:
>>
>> plt.plot(x[::5], pdf_min[::5], x[::5], pdf_max[::5], color="k")
>> plt.fill_between(x[::5], pdf_min[::5], pdf_max[::5], color='0.85')
>>
>> but obviously that's not doing anything terribly smart, so it won't work
>> with all data.
>
> First thank you for that way how it works...
>
> just some short questions, after I tried it this way (and it is working:)):
> 1) What does this decimate [::5] actually mean, what does it?
It takes every 5th point and ignores the rest. It is an example of 
python slicing, which means taking a uniformly-spaced subset of a sequence.
> 2) In which case will it fail if you say it won't work with all data?
Two failure modes: (1) if taking every 5th point still leaves too many 
points; (2) if taking every 5th point leaves out points that would have 
an important effect on the shape of the curve, so the figure you end up 
with is not an accurate representation of what you are trying to plot.
> 3) Actually I have to use that [::5] only for the fill_between as the usual line plot works, or am I wrong?
Correct. What Mike is saying is that for ordinary lines, mpl has a 
sophisticated algorithm for eliminating points that don't affect what 
one sees in the figure, so it is much less likely that the postscript 
renderer will run out of stack space; but this algorithm is not used for 
filled regions because points that are not needed for representing a 
line might still be needed for a filled region.
Eric
>
> /johannes
From: C M <cmp...@gm...> - 2011年05月13日 18:36:59
On Wed, May 11, 2011 at 12:29 AM, Jae-Joon Lee <lee...@gm...> wrote:
> I think I fixed a similar bug at some point but I'm not sure if that
> is related with this.
> Are you using the *make_axes_area_auto_adjustable* from the current
> git master (check
> examples/axes_grid/make_room_for_ylabel_using_axesgrid.py)? If not can
> you try that? Also please post your code.
It seems I can't build matplotlib from source. Would it be possible to
attach the amended files to this list and I'll try them?
Thank you,
Che
From: C M <cmp...@gm...> - 2011年05月13日 17:46:49
On Fri, May 13, 2011 at 6:23 AM, Pauli Virtanen <pa...@ik...> wrote:
> 2011年5月12日 15:16:43 -0400, C M wrote:
> [clip: installing Python modules]
>> Is there a step-by-step method on the
>> website that shows how to do this?
>
> Here: http://docs.python.org/install/index.html
Thanks, but I guess I can't install matplotlib since I can't build it,
since I don't have VS2003.
From: Johannes R. <JRa...@gm...> - 2011年05月13日 15:20:06
-------- Original-Nachricht --------
> Datum: 2011年5月13日 10:58:15 -0400
> Von: Michael Droettboom <md...@st...>
> An: mat...@li...
> Betreff: Re: [Matplotlib-users] eps output and fill_between
> Running it through gs (ghostscript) gives this error:
> 
> =====
> 
> GPL Ghostscript 8.70 (2009年07月31日)
> Copyright (C) 2009 Artifex Software, Inc. All rights reserved.
> This software comes with NO WARRANTY: see the file PUBLIC for details.
> Error: /stackoverflow in -file-
> Operand stack:
> --nostringval--
> Execution stack:
> %interp_exit .runexec2 --nostringval-- --nostringval-- 
> --nostringval-- 2 %stopped_push --nostringval-- 
> --nostringval-- --nostringval-- false 1 %stopped_push 1846 
> 1 3 %oparray_pop 1845 1 3 %oparray_pop --nostringval-- 
> 1829 1 3 %oparray_pop 1723 1 3 %oparray_pop 
> --nostringval-- %errorexec_pop .runexec2 --nostringval-- 
> --nostringval-- --nostringval-- 2 %stopped_push
> Dictionary stack:
> --dict:1148/1684(ro)(G)-- --dict:0/20(G)-- --dict:75/200(L)-- 
> --dict:7/8(L)--
> Current allocation mode is local
> Current file position is 675310
> GPL Ghostscript 8.70: Unrecoverable error, exit code 1
> 
> =====
> 
> This indicates that the Postscript is running out of stack space 
> (memory). Indeed, the file has a very large path in it.
> 
> A little background: matplotlib includes an algorithm to "simplify" 
> really long paths by removing points that don't actually contribute to 
> the resulting image. Unfortunately, this algorithm only works for 
> unfilled paths -- dealing with the more general case of filled paths is 
> more difficult. That's why you only see this problem when using 
> "fill_between" and not just when plotting lines.
> 
> The problem here is that it's hard to trap for this error -- the size of 
> the Postscript stack is dependent on the Postscript interpreter being 
> used, so what works in one place may not in another.
> 
> A simple way around this is to just decimate the data, i.e.:
> 
> plt.plot(x[::5], pdf_min[::5], x[::5], pdf_max[::5], color="k")
> plt.fill_between(x[::5], pdf_min[::5], pdf_max[::5], color='0.85')
> 
> but obviously that's not doing anything terribly smart, so it won't work 
> with all data.
First thank you for that way how it works...
just some short questions, after I tried it this way (and it is working:)):
1) What does this decimate [::5] actually mean, what does it?
2) In which case will it fail if you say it won't work with all data?
3) Actually I have to use that [::5] only for the fill_between as the usual line plot works, or am I wrong?
/johannes
> 
> Mike
> 
> On 05/13/2011 10:00 AM, Johannes Radinger wrote:
> > Does anyone already know what causes the problem with the fill_between
> and the eps output?
> >
> > /johannes
> >
> >
> > -------- Original-Nachricht --------
> > 
> >> Datum: 2011年5月12日 17:10:43 +0200
> >> Von: Johannes Radinger<JRa...@gm...>
> >> An: John Hunter<jd...@gm...>
> >> CC: mat...@li...
> >> Betreff: Re: [Matplotlib-users] eps output and fill_between
> >> 
> > 
> >> Hello again,
> >>
> >> I tried the script you provided to test the PolyCollection and that
> works
> >> fine.
> >> I am working under Mac OS X 10.6.6 Snow Leopard and use matplotlib
> 1.0.1.
> >>
> >> That is the script where I fail with eps but not with pdf:
> >>
> >>
> >>
> >> import matplotlib.pyplot as plt
> >> import numpy
> >> from scipy import stats
> >>
> >> p=0.3
> >> m=0
> >> s1min=120
> >> s1max=140
> >> s2min=1200
> >> s2max=1600
> >>
> >> x = numpy.arange((s2max*-1.5), (s2max*1.5), 0.2)
> >>
> >> def pdf(x,s1,s2):
> >> return p * stats.norm.pdf(x, loc=m, scale=s1) + (1-p) *
> >> stats.norm.pdf(x, loc=m, scale=s2)
> >>
> >>
> >> pdf_min = pdf(x,s1min,s2min)
> >> pdf_max = pdf(x,s1max,s2max)
> >>
> >> plt.plot(x, pdf_min, x, pdf_max, color="k")
> >> plt.fill_between(x, pdf_min, pdf_max, color='0.85')
> >>
> >>
> >> #plt.show()
> >> #plt.savefig("testplot.eps")
> >> plt.savefig("testplot.pdf")
> >>
> >>
> >> /Johannes
> >>
> >> Am 12.05.2011 um 15:28 schrieb John Hunter:
> >>
> >> 
> >>>
> >>> On Thu, May 12, 2011 at 3:42 AM, Johannes Radinger<JRa...@gm...>
> >>> 
> >> wrote:
> >> 
> >>> Hello ,
> >>>
> >>> sofar I know how to safe a plot into a *.eps file and it works good,
> >>> but there is one issue with filled areas between two functions.
> >>>
> >>> When I try to use:
> >>> plt.fill_between(x, pdf_min, pdf_max, color='0.85')
> >>>
> >>> and I try to open it on my mac I fail. So far as I know
> >>> is the mac converting the eps internally to pdf to be
> >>> displayed, but it seems it can't be converted.
> >>>
> >>> If I try to set the output to *.pdf it works perfectly and I can
> >>> open the file. Something in the combination of fill_between
> >>> and eps is causing the error. I tried also color="red" but with
> >>> the same problems.
> >>>
> >>> Is there anything I've to set because I need the output as
> >>> a working eps.
> >>>
> >>>
> >>> under the hool, fill_between uses a PolyCollection. Below is a simple
> >>> 
> >> example which uses a PolyCollection directly. Does this crash when you
> >> convert eps -> pdf. If not, maybe we can hone in on what is special
> about the
> >> vertices in your fill_between example. Also, you should give us some
> >> information about what version of matplotlib and OSX you are running.
> >> 
> >>>
> >>> import numpy as np
> >>> import matplotlib.collections as mcollections
> >>> import matplotlib.pyplot as plt
> >>>
> >>> theta = np.linspace(0, 2*np.pi, 20)
> >>> x1 = np.cos(theta)
> >>> y1 = np.sin(theta)
> >>>
> >>> x2 = x1 + 5
> >>> y2 = y1 + 5
> >>>
> >>> verts1 = zip(x1, y1)
> >>> verts2 = zip(x2, y2)
> >>>
> >>> c = mcollections.PolyCollection([verts1, verts2], facecolors=['red',
> >>> 
> >> 'green'])
> >> 
> >>> ax = plt.subplot(111)
> >>> ax.add_collection(c)
> >>> ax.axis([-5, 10, -5, 10])
> >>>
> >>> plt.savefig('test.eps')
> >>> plt.show()
> >>>
> >>> 
> >> 
> > 
> 
> 
> -- 
> Michael Droettboom
> Science Software Branch
> Space Telescope Science Institute
> Baltimore, Maryland, USA
> 
> 
> ------------------------------------------------------------------------------
> Achieve unprecedented app performance and reliability
> What every C/C++ and Fortran developer should know.
> Learn how Intel has extended the reach of its next-generation tools
> to help boost performance applications - inlcuding clusters.
> http://p.sf.net/sfu/intel-dev2devmay
> _______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
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From: Michael D. <md...@st...> - 2011年05月13日 15:03:59
I think there's a confusion of definition here:
 figure: The entire image
 axes: A box within the figure containing a plot
Mike
On 05/13/2011 10:20 AM, Johannes Radinger wrote:
> That is not what I want, to put the text inside the figure.
>
> I want the text above the figure with some space (e.g 2 cm) to the figure
> thats why I tried 0, 1.2 but then the text is outside the margins
>
> /j
> -------- Original-Nachricht --------
> 
>> Datum: 2011年5月13日 14:03:16 +0000 (UTC)
>> Von: Pauli Virtanen<pa...@ik...>
>> An: mat...@li...
>> Betreff: Re: [Matplotlib-users] Text outside the graphs "box"
>> 
> 
>> 2011年5月13日 15:58:37 +0200, Johannes Radinger wrote:
>> 
>>> Hello again I tried:
>>>
>>> plt.figtext(0, 1.2, r'$F(x)=p*\frac{1}{s1\sqrt{2\pi}}$', fontsize=20)
>>>
>>> but then the text is outside the printed area and therefore not
>>> displayed. Does that mean that the printed area has to be changed as
>>> well?
>>> 
>> The first two parameters are the x and y coordinates of the text,
>> in range [0, 1]. Adjust them to put the text inside the figure.
>>
>>
>> ------------------------------------------------------------------------------
>> Achieve unprecedented app performance and reliability
>> What every C/C++ and Fortran developer should know.
>> Learn how Intel has extended the reach of its next-generation tools
>> to help boost performance applications - inlcuding clusters.
>> http://p.sf.net/sfu/intel-dev2devmay
>> _______________________________________________
>> Matplotlib-users mailing list
>> Mat...@li...
>> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
>> 
> 
-- 
Michael Droettboom
Science Software Branch
Space Telescope Science Institute
Baltimore, Maryland, USA
From: Benjamin R. <ben...@ou...> - 2011年05月13日 15:02:15
On Friday, May 13, 2011, Johannes Radinger <JRa...@gm...> wrote:
> That is not what I want, to put the text inside the figure.
>
> I want the text above the figure with some space (e.g 2 cm) to the figure
> thats why I tried 0, 1.2 but then the text is outside the margins
>
"figure" is the term for the entire printable space. The graphs that
are made in a figure are called "plots". figtext() lets you put text
anywhere you want in the normalized domain of 0 to 1. If you want the
text exactly in the middle, the specify 0.5, 0.5. Want it in a
corner, then you can do 0.0, 1.0. Figtext is what you want.
Ben Root
From: Michael D. <md...@st...> - 2011年05月13日 14:58:17
Running it through gs (ghostscript) gives this error:
=====
GPL Ghostscript 8.70 (2009年07月31日)
Copyright (C) 2009 Artifex Software, Inc. All rights reserved.
This software comes with NO WARRANTY: see the file PUBLIC for details.
Error: /stackoverflow in -file-
Operand stack:
 --nostringval--
Execution stack:
 %interp_exit .runexec2 --nostringval-- --nostringval-- 
--nostringval-- 2 %stopped_push --nostringval-- 
--nostringval-- --nostringval-- false 1 %stopped_push 1846 
1 3 %oparray_pop 1845 1 3 %oparray_pop --nostringval-- 
1829 1 3 %oparray_pop 1723 1 3 %oparray_pop 
--nostringval-- %errorexec_pop .runexec2 --nostringval-- 
--nostringval-- --nostringval-- 2 %stopped_push
Dictionary stack:
 --dict:1148/1684(ro)(G)-- --dict:0/20(G)-- --dict:75/200(L)-- 
--dict:7/8(L)--
Current allocation mode is local
Current file position is 675310
GPL Ghostscript 8.70: Unrecoverable error, exit code 1
=====
This indicates that the Postscript is running out of stack space 
(memory). Indeed, the file has a very large path in it.
A little background: matplotlib includes an algorithm to "simplify" 
really long paths by removing points that don't actually contribute to 
the resulting image. Unfortunately, this algorithm only works for 
unfilled paths -- dealing with the more general case of filled paths is 
more difficult. That's why you only see this problem when using 
"fill_between" and not just when plotting lines.
The problem here is that it's hard to trap for this error -- the size of 
the Postscript stack is dependent on the Postscript interpreter being 
used, so what works in one place may not in another.
A simple way around this is to just decimate the data, i.e.:
 plt.plot(x[::5], pdf_min[::5], x[::5], pdf_max[::5], color="k")
 plt.fill_between(x[::5], pdf_min[::5], pdf_max[::5], color='0.85')
but obviously that's not doing anything terribly smart, so it won't work 
with all data.
Mike
On 05/13/2011 10:00 AM, Johannes Radinger wrote:
> Does anyone already know what causes the problem with the fill_between and the eps output?
>
> /johannes
>
>
> -------- Original-Nachricht --------
> 
>> Datum: 2011年5月12日 17:10:43 +0200
>> Von: Johannes Radinger<JRa...@gm...>
>> An: John Hunter<jd...@gm...>
>> CC: mat...@li...
>> Betreff: Re: [Matplotlib-users] eps output and fill_between
>> 
> 
>> Hello again,
>>
>> I tried the script you provided to test the PolyCollection and that works
>> fine.
>> I am working under Mac OS X 10.6.6 Snow Leopard and use matplotlib 1.0.1.
>>
>> That is the script where I fail with eps but not with pdf:
>>
>>
>>
>> import matplotlib.pyplot as plt
>> import numpy
>> from scipy import stats
>>
>> p=0.3
>> m=0
>> s1min=120
>> s1max=140
>> s2min=1200
>> s2max=1600
>>
>> x = numpy.arange((s2max*-1.5), (s2max*1.5), 0.2)
>>
>> def pdf(x,s1,s2):
>> return p * stats.norm.pdf(x, loc=m, scale=s1) + (1-p) *
>> stats.norm.pdf(x, loc=m, scale=s2)
>>
>>
>> pdf_min = pdf(x,s1min,s2min)
>> pdf_max = pdf(x,s1max,s2max)
>>
>> plt.plot(x, pdf_min, x, pdf_max, color="k")
>> plt.fill_between(x, pdf_min, pdf_max, color='0.85')
>>
>>
>> #plt.show()
>> #plt.savefig("testplot.eps")
>> plt.savefig("testplot.pdf")
>>
>>
>> /Johannes
>>
>> Am 12.05.2011 um 15:28 schrieb John Hunter:
>>
>> 
>>>
>>> On Thu, May 12, 2011 at 3:42 AM, Johannes Radinger<JRa...@gm...>
>>> 
>> wrote:
>> 
>>> Hello ,
>>>
>>> sofar I know how to safe a plot into a *.eps file and it works good,
>>> but there is one issue with filled areas between two functions.
>>>
>>> When I try to use:
>>> plt.fill_between(x, pdf_min, pdf_max, color='0.85')
>>>
>>> and I try to open it on my mac I fail. So far as I know
>>> is the mac converting the eps internally to pdf to be
>>> displayed, but it seems it can't be converted.
>>>
>>> If I try to set the output to *.pdf it works perfectly and I can
>>> open the file. Something in the combination of fill_between
>>> and eps is causing the error. I tried also color="red" but with
>>> the same problems.
>>>
>>> Is there anything I've to set because I need the output as
>>> a working eps.
>>>
>>>
>>> under the hool, fill_between uses a PolyCollection. Below is a simple
>>> 
>> example which uses a PolyCollection directly. Does this crash when you
>> convert eps -> pdf. If not, maybe we can hone in on what is special about the
>> vertices in your fill_between example. Also, you should give us some
>> information about what version of matplotlib and OSX you are running.
>> 
>>>
>>> import numpy as np
>>> import matplotlib.collections as mcollections
>>> import matplotlib.pyplot as plt
>>>
>>> theta = np.linspace(0, 2*np.pi, 20)
>>> x1 = np.cos(theta)
>>> y1 = np.sin(theta)
>>>
>>> x2 = x1 + 5
>>> y2 = y1 + 5
>>>
>>> verts1 = zip(x1, y1)
>>> verts2 = zip(x2, y2)
>>>
>>> c = mcollections.PolyCollection([verts1, verts2], facecolors=['red',
>>> 
>> 'green'])
>> 
>>> ax = plt.subplot(111)
>>> ax.add_collection(c)
>>> ax.axis([-5, 10, -5, 10])
>>>
>>> plt.savefig('test.eps')
>>> plt.show()
>>>
>>> 
>> 
> 
-- 
Michael Droettboom
Science Software Branch
Space Telescope Science Institute
Baltimore, Maryland, USA
From: Sirdouille <si...@gm...> - 2011年05月13日 14:48:58
Hello everyone,
I am having regular segmentation fault crashes using matplotlib under the
configuration describes in the title. This is particularly annoying. I have
not been able to identify a common pattern in the different things I do
before it crashes (just regular plotting, resizing, xlabeling,
ylabeling,...).
I have python, numpy, scipy and matplotlib installed following the
instructions given at
http://www.bytemining.com/2011/03/instructions-for-installing-64bit-scipy-python-2-7-1-on-macos-x-10-6/
I have a bunch of diagnostic reports of the crashes ; I am not very sure of
what I read in there. I have reported two of them below.
If anybody has had a similar problem or knows how to read those reports, I
would appreciate if you gave me a hint.
Have a nice day,
Sirdouille.
-----------------------------------------------------------------------------------------------------------------
Process: Python [1999]
Path: 
/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: org.python.python
Version: 2.7.1 (2.7.1)
Code Type: X86-64 (Native)
Parent Process: bash [900]
Date/Time: 2011年05月13日 16:01:45.466 +0200
OS Version: Mac OS X 10.6.7 (10J869)
Report Version: 6
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: 0x000000000000000d, 0x0000000000000000
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Application Specific Information:
objc_msgSend() selector name: removeFromSuperviewWithoutNeedingDisplay
Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 libobjc.A.dylib 	0x00007fff807be13e objc_msgSend + 74
1 com.apple.CoreFoundation 	0x00007fff86ec8d4e CFArrayApplyFunction +
222
2 com.apple.AppKit 	0x00007fff82ee94cc -[NSView
_finalizeWithReferenceCounting] + 831
3 com.apple.AppKit 	0x00007fff82ee9164 -[NSView dealloc] + 38
4 com.apple.CoreFoundation 	0x00007fff86ed21e6 _CFAutoreleasePoolPop
+ 230
5 com.apple.Foundation 	0x00007fff82bc3ecb -[NSAutoreleasePool
release] + 158
6 _macosx.so 	0x0000000102b79f75 wait_for_stdin + 597
7 readline.so 	0x00000001012cffc5 call_readline + 309
8 org.python.python 	0x0000000100008ee2 PyOS_Readline + 274
9 org.python.python 	0x00000001000b6a95 builtin_raw_input +
597
10 org.python.python 	0x00000001000c124d PyEval_EvalFrameEx +
22397
11 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
12 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
13 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
14 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
15 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
16 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
17 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
18 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
19 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
20 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
21 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
22 org.python.python 	0x00000001000c3066 PyEval_EvalCode + 54
23 org.python.python 	0x00000001000e7b2e PyRun_FileExFlags +
174
24 org.python.python 	0x00000001000e7de9
PyRun_SimpleFileExFlags + 489
25 org.python.python 	0x00000001000fe75c Py_Main + 2940
26 org.python.python 	0x0000000100000f14 0x100000000 + 3860
Thread 1: com.apple.CFSocket.private
0 libSystem.B.dylib 	0x00007fff81820e52 select$DARWIN_EXTSN +
10
1 com.apple.CoreFoundation 	0x00007fff86f0b498 __CFSocketManager +
824
2 libSystem.B.dylib 	0x00007fff818164f6 _pthread_start + 331
3 libSystem.B.dylib 	0x00007fff818163a9 thread_start + 13
Thread 2: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 	0x00007fff817f612a kevent + 10
1 libSystem.B.dylib 	0x00007fff817f7ffd _dispatch_mgr_invoke +
154
2 libSystem.B.dylib 	0x00007fff817f7cd4 _dispatch_queue_invoke
+ 185
3 libSystem.B.dylib 	0x00007fff817f77fe
_dispatch_worker_thread2 + 252
4 libSystem.B.dylib 	0x00007fff817f7128 _pthread_wqthread +
353
5 libSystem.B.dylib 	0x00007fff817f6fc5 start_wqthread + 13
Thread 0 crashed with X86 Thread State (64-bit):
 rax: 0x00000001030f72f8 rbx: 0x0000000000000000 rcx: 0x0000000000000000 
rdx: 0x00000001030f72c0
 rdi: 0x0000000103411d70 rsi: 0x00007fff835dd6e0 rbp: 0x00007fff5fbfde70 
rsp: 0x00007fff5fbfde18
 r8: 0x00000001034e000e r9: 0x0000000000000000 r10: 0x0000000103253dc0 
r11: 0x000101d8c9f01699
 r12: 0x0000000000000000 r13: 0x0000000103442ca0 r14: 0x0000000000000009 
r15: 0x0000000000000000
 rip: 0x00007fff807be13e rfl: 0x0000000000010246 cr2: 0x0000000086ee2000
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-----------------------------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------------------------------
Process: Python [1603]
Path: 
/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: org.python.python
Version: 2.7.1 (2.7.1)
Code Type: X86-64 (Native)
Parent Process: bash [900]
Date/Time: 2011年05月13日 15:58:23.219 +0200
OS Version: Mac OS X 10.6.7 (10J869)
Report Version: 6
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000010
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Application Specific Information:
objc_msgSend() selector name: _propagateDirtyRectsToOpaqueAncestors
Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 libobjc.A.dylib 	0x00007fff807be11c objc_msgSend + 40
1 com.apple.CoreFoundation 	0x00007fff86ec8d4e CFArrayApplyFunction +
222
2 com.apple.AppKit 	0x00007fff83485c55 -[NSView
_propagateDirtyRectsToOpaqueAncestors] + 168
3 com.apple.AppKit 	0x00007fff82eef934 -[NSView
displayIfNeeded] + 355
4 com.apple.AppKit 	0x00007fff82eeaa46
_handleWindowNeedsDisplay + 678
5 com.apple.CoreFoundation 	0x00007fff86f0db37 __CFRunLoopDoObservers
+ 519
6 com.apple.CoreFoundation 	0x00007fff86ee9464 __CFRunLoopRun + 468
7 com.apple.CoreFoundation 	0x00007fff86ee8dbf CFRunLoopRunSpecific +
575
8 com.apple.HIToolbox 	0x00007fff87fe97ee
RunCurrentEventLoopInMode + 333
9 com.apple.HIToolbox 	0x00007fff87fe9551 ReceiveNextEventCommon
+ 148
10 com.apple.HIToolbox 	0x00007fff87fe94ac
BlockUntilNextEventMatchingListInMode + 59
11 com.apple.AppKit 	0x00007fff82ebfe64 _DPSNextEvent + 718
12 com.apple.AppKit 	0x00007fff82ebf7a9 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 155
13 _macosx.so 	0x00000001029cff22 wait_for_stdin + 514
14 readline.so 	0x00000001012cffc5 call_readline + 309
15 org.python.python 	0x0000000100008ee2 PyOS_Readline + 274
16 org.python.python 	0x00000001000b6a95 builtin_raw_input +
597
17 org.python.python 	0x00000001000c124d PyEval_EvalFrameEx +
22397
18 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
19 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
20 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
21 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
22 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
23 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
24 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
25 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
26 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
27 org.python.python 	0x00000001000c0d8a PyEval_EvalFrameEx +
21178
28 org.python.python 	0x00000001000c2f49 PyEval_EvalCodeEx +
2137
29 org.python.python 	0x00000001000c3066 PyEval_EvalCode + 54
30 org.python.python 	0x00000001000e7b2e PyRun_FileExFlags +
174
31 org.python.python 	0x00000001000e7de9
PyRun_SimpleFileExFlags + 489
32 org.python.python 	0x00000001000fe75c Py_Main + 2940
33 org.python.python 	0x0000000100000f14 0x100000000 + 3860
Thread 1: com.apple.CFSocket.private
0 libSystem.B.dylib 	0x00007fff81820e52 select$DARWIN_EXTSN +
10
1 com.apple.CoreFoundation 	0x00007fff86f0b498 __CFSocketManager +
824
2 libSystem.B.dylib 	0x00007fff818164f6 _pthread_start + 331
3 libSystem.B.dylib 	0x00007fff818163a9 thread_start + 13
Thread 2: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 	0x00007fff817f612a kevent + 10
1 libSystem.B.dylib 	0x00007fff817f7ffd _dispatch_mgr_invoke +
154
2 libSystem.B.dylib 	0x00007fff817f7cd4 _dispatch_queue_invoke
+ 185
3 libSystem.B.dylib 	0x00007fff817f77fe
_dispatch_worker_thread2 + 252
4 libSystem.B.dylib 	0x00007fff817f7128 _pthread_wqthread +
353
5 libSystem.B.dylib 	0x00007fff817f6fc5 start_wqthread + 13
Thread 3:
0 libSystem.B.dylib 	0x00007fff817dd29a mach_msg_trap + 10
1 libSystem.B.dylib 	0x00007fff817dd90d mach_msg + 59
2 com.apple.CoreFoundation 	0x00007fff86ee9932 __CFRunLoopRun + 1698
3 com.apple.CoreFoundation 	0x00007fff86ee8dbf CFRunLoopRunSpecific +
575
4 com.apple.CoreFoundation 	0x00007fff86ee8b46 CFRunLoopRun + 70
5 com.apple.DesktopServices 	0x00007fff862c34d2
TSystemNotificationTask::SystemNotificationTaskProc(void*) + 514
6 ...ple.CoreServices.CarbonCore	0x00007fff83def335 PrivateMPEntryPoint +
63
7 libSystem.B.dylib 	0x00007fff818164f6 _pthread_start + 331
8 libSystem.B.dylib 	0x00007fff818163a9 thread_start + 13
Thread 0 crashed with X86 Thread State (64-bit):
 rax: 0x000000010d823470 rbx: 0x0000000000000018 rcx: 0x0000000000000086 
rdx: 0x000000010d823430
 rdi: 0x0000000152a36ee0 rsi: 0x00007fff835eb47f rbp: 0x00007fff5fbfcb40 
rsp: 0x00007fff5fbfcae8
 r8: 0x0000000000000001 r9: 0x0000000139de2a40 r10: 0x00007fff86ec6f40 
r11: 0x0000000000000000
 r12: 0x0000000000000003 r13: 0x000000010d822f30 r14: 0x0000000000000004 
r15: 0x0000000000000000
 rip: 0x00007fff807be11c rfl: 0x0000000000010202 cr2: 0x0000000000000010
Binary Images:
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2004-2008 Python Software Foundation. (2.7.1)
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[truncated message content]
From: Johannes R. <JRa...@gm...> - 2011年05月13日 14:20:40
That is not what I want, to put the text inside the figure.
I want the text above the figure with some space (e.g 2 cm) to the figure
thats why I tried 0, 1.2 but then the text is outside the margins
/j
-------- Original-Nachricht --------
> Datum: 2011年5月13日 14:03:16 +0000 (UTC)
> Von: Pauli Virtanen <pa...@ik...>
> An: mat...@li...
> Betreff: Re: [Matplotlib-users] Text outside the graphs "box"
> 2011年5月13日 15:58:37 +0200, Johannes Radinger wrote:
> > Hello again I tried:
> > 
> > plt.figtext(0, 1.2, r'$F(x)=p*\frac{1}{s1\sqrt{2\pi}}$', fontsize=20)
> > 
> > but then the text is outside the printed area and therefore not
> > displayed. Does that mean that the printed area has to be changed as
> > well?
> 
> The first two parameters are the x and y coordinates of the text,
> in range [0, 1]. Adjust them to put the text inside the figure.
> 
> 
> ------------------------------------------------------------------------------
> Achieve unprecedented app performance and reliability
> What every C/C++ and Fortran developer should know.
> Learn how Intel has extended the reach of its next-generation tools
> to help boost performance applications - inlcuding clusters.
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From: Pauli V. <pa...@ik...> - 2011年05月13日 14:03:44
2011年5月13日 15:58:37 +0200, Johannes Radinger wrote:
> Hello again I tried:
> 
> plt.figtext(0, 1.2, r'$F(x)=p*\frac{1}{s1\sqrt{2\pi}}$', fontsize=20)
> 
> but then the text is outside the printed area and therefore not
> displayed. Does that mean that the printed area has to be changed as
> well?
The first two parameters are the x and y coordinates of the text,
in range [0, 1]. Adjust them to put the text inside the figure.
From: Johannes R. <JRa...@gm...> - 2011年05月13日 14:00:43
Does anyone already know what causes the problem with the fill_between and the eps output?
/johannes
-------- Original-Nachricht --------
> Datum: 2011年5月12日 17:10:43 +0200
> Von: Johannes Radinger <JRa...@gm...>
> An: John Hunter <jd...@gm...>
> CC: mat...@li...
> Betreff: Re: [Matplotlib-users] eps output and fill_between
> Hello again,
> 
> I tried the script you provided to test the PolyCollection and that works
> fine.
> I am working under Mac OS X 10.6.6 Snow Leopard and use matplotlib 1.0.1.
> 
> That is the script where I fail with eps but not with pdf:
> 
> 
> 
> import matplotlib.pyplot as plt
> import numpy
> from scipy import stats
> 
> p=0.3
> m=0
> s1min=120
> s1max=140
> s2min=1200
> s2max=1600
> 
> x = numpy.arange((s2max*-1.5), (s2max*1.5), 0.2)
> 
> def pdf(x,s1,s2):
> return p * stats.norm.pdf(x, loc=m, scale=s1) + (1-p) *
> stats.norm.pdf(x, loc=m, scale=s2)
> 
> 
> pdf_min = pdf(x,s1min,s2min)
> pdf_max = pdf(x,s1max,s2max)
> 
> plt.plot(x, pdf_min, x, pdf_max, color="k")
> plt.fill_between(x, pdf_min, pdf_max, color='0.85')
> 
> 
> #plt.show()
> #plt.savefig("testplot.eps")
> plt.savefig("testplot.pdf")
> 
> 
> /Johannes
> 
> Am 12.05.2011 um 15:28 schrieb John Hunter:
> 
> > 
> > 
> > On Thu, May 12, 2011 at 3:42 AM, Johannes Radinger <JRa...@gm...>
> wrote:
> > Hello ,
> > 
> > sofar I know how to safe a plot into a *.eps file and it works good,
> > but there is one issue with filled areas between two functions.
> > 
> > When I try to use:
> > plt.fill_between(x, pdf_min, pdf_max, color='0.85')
> > 
> > and I try to open it on my mac I fail. So far as I know
> > is the mac converting the eps internally to pdf to be
> > displayed, but it seems it can't be converted.
> > 
> > If I try to set the output to *.pdf it works perfectly and I can
> > open the file. Something in the combination of fill_between
> > and eps is causing the error. I tried also color="red" but with
> > the same problems.
> > 
> > Is there anything I've to set because I need the output as
> > a working eps.
> > 
> > 
> > under the hool, fill_between uses a PolyCollection. Below is a simple
> example which uses a PolyCollection directly. Does this crash when you
> convert eps -> pdf. If not, maybe we can hone in on what is special about the
> vertices in your fill_between example. Also, you should give us some
> information about what version of matplotlib and OSX you are running.
> > 
> > 
> > import numpy as np
> > import matplotlib.collections as mcollections
> > import matplotlib.pyplot as plt
> > 
> > theta = np.linspace(0, 2*np.pi, 20)
> > x1 = np.cos(theta)
> > y1 = np.sin(theta)
> > 
> > x2 = x1 + 5
> > y2 = y1 + 5
> > 
> > verts1 = zip(x1, y1)
> > verts2 = zip(x2, y2)
> > 
> > c = mcollections.PolyCollection([verts1, verts2], facecolors=['red',
> 'green'])
> > 
> > ax = plt.subplot(111)
> > ax.add_collection(c)
> > ax.axis([-5, 10, -5, 10])
> > 
> > plt.savefig('test.eps')
> > plt.show()
> > 
> 
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From: Johannes R. <JRa...@gm...> - 2011年05月13日 13:58:46
Hello again I tried:
plt.figtext(0, 1.2, r'$F(x)=p*\frac{1}{s1\sqrt{2\pi}}$', fontsize=20)
but then the text is outside the printed area and therefore not displayed.
Does that mean that the printed area has to be changed as well?
/j
-------- Original-Nachricht --------
> Datum: 2011年5月13日 09:27:24 -0400
> Von: Michael Droettboom <md...@st...>
> An: mat...@li...
> Betreff: Re: [Matplotlib-users] Text outside the graphs "box"
> figtext will let you place text relative to the figure, not the axes:
> 
> http://matplotlib.sourceforge.net/api/pyplot_api.html#matplotlib.pyplot.figtext
> 
> Cheers,
> Mike
> 
> On 05/13/2011 08:46 AM, Johannes Radinger wrote:
> > Hej
> >
> >
> > I want to include a mathematical expression but want to position it
> > outside the graphs box. I want it above the graph, so i tried to set it
> as title but there is to less space between the title and the graphs box.
> >
> > how can that be done? how to set a position outside the box?
> >
> > I tried eg:
> >
> > plt.title(r'$F(x)=p*\frac{1}{s1\sqrt{2\pi}}$', fontsize=20)
> >
> > thanks
> >
> > /johannes
> > 
> 
> 
> -- 
> Michael Droettboom
> Science Software Branch
> Space Telescope Science Institute
> Baltimore, Maryland, USA
> 
> 
> ------------------------------------------------------------------------------
> Achieve unprecedented app performance and reliability
> What every C/C++ and Fortran developer should know.
> Learn how Intel has extended the reach of its next-generation tools
> to help boost performance applications - inlcuding clusters.
> http://p.sf.net/sfu/intel-dev2devmay
> _______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
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From: Michael D. <md...@st...> - 2011年05月13日 13:29:14
figtext will let you place text relative to the figure, not the axes:
http://matplotlib.sourceforge.net/api/pyplot_api.html#matplotlib.pyplot.figtext
Cheers,
Mike
On 05/13/2011 08:46 AM, Johannes Radinger wrote:
> Hej
>
>
> I want to include a mathematical expression but want to position it
> outside the graphs box. I want it above the graph, so i tried to set it as title but there is to less space between the title and the graphs box.
>
> how can that be done? how to set a position outside the box?
>
> I tried eg:
>
> plt.title(r'$F(x)=p*\frac{1}{s1\sqrt{2\pi}}$', fontsize=20)
>
> thanks
>
> /johannes
> 
-- 
Michael Droettboom
Science Software Branch
Space Telescope Science Institute
Baltimore, Maryland, USA
From: Johannes R. <JRa...@gm...> - 2011年05月13日 12:46:23
Hej
I want to include a mathematical expression but want to position it
outside the graphs box. I want it above the graph, so i tried to set it as title but there is to less space between the title and the graphs box.
how can that be done? how to set a position outside the box?
I tried eg: 
plt.title(r'$F(x)=p*\frac{1}{s1\sqrt{2\pi}}$', fontsize=20)
thanks
/johannes
-- 
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From: Pauli V. <pa...@ik...> - 2011年05月13日 10:23:29
2011年5月12日 15:16:43 -0400, C M wrote:
[clip: installing Python modules]
> Is there a step-by-step method on the
> website that shows how to do this?
Here: http://docs.python.org/install/index.html

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