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On Thu, May 12, 2011 at 2:50 PM, Michael Droettboom <md...@st...> wrote: > On 05/12/2011 02:34 PM, C M wrote: >> >> On Thu, May 12, 2011 at 1:26 PM, Michael Droettboom<md...@st...> >> wrote: >> >>> >>> You can always get a tarball of the current git master by going here: >>> >>> https://github.com/matplotlib/matplotlib >>> >>> clicking on "Download" and choosing one of the "download source" options >>> at the top of the popup box. >>> >>> Mike >>> >> >> Thanks, but I'm having trouble using that. I downloaded the .zip >> file, unzipped the archive, moved the folder to >> C:\Python25\Lib\site-packages, renamed my current matplotlib folder to >> matplotlib_OLD, ran these commands from the new directory: >> >> python setup.py build >> python setup.py install >> >> And finally renamed the new folder to just matplotlib. It is not >> finding the modules when I go to run it. If revert the names of the >> folders, my old folder still works. What am I doing wrong? >> > > You should not expand the directory tree under site-packages -- "python > setup.py install" is what does that for you. You should expand it anywhere > else (most people create a "src" directory somewhere on their machine for > source code). Then run those commands. I unzipped it in a download directory, changed the directory to that folder, and ran the commands again...and it did not put a matplotlib folder under site-packages. Is there a step-by-step method on the website that shows how to do this? But all I really want is the changes that Jae Joon made as mentioned above. Is there a way to just grab them from the new folders? (I thought not because the folder structure from what I downloaded from git master doesn't match the folder structure I had from mpl 1.0, downloaded from the main mpl page). Thanks, Che
On 05/12/2011 02:34 PM, C M wrote: > On Thu, May 12, 2011 at 1:26 PM, Michael Droettboom<md...@st...> wrote: > >> You can always get a tarball of the current git master by going here: >> >> https://github.com/matplotlib/matplotlib >> >> clicking on "Download" and choosing one of the "download source" options >> at the top of the popup box. >> >> Mike >> > Thanks, but I'm having trouble using that. I downloaded the .zip > file, unzipped the archive, moved the folder to > C:\Python25\Lib\site-packages, renamed my current matplotlib folder to > matplotlib_OLD, ran these commands from the new directory: > > python setup.py build > python setup.py install > > And finally renamed the new folder to just matplotlib. It is not > finding the modules when I go to run it. If revert the names of the > folders, my old folder still works. What am I doing wrong? > You should not expand the directory tree under site-packages -- "python setup.py install" is what does that for you. You should expand it anywhere else (most people create a "src" directory somewhere on their machine for source code). Then run those commands. Cheers, Mike -- Michael Droettboom Science Software Branch Space Telescope Science Institute Baltimore, Maryland, USA
On Thu, May 12, 2011 at 1:26 PM, Michael Droettboom <md...@st...> wrote: > You can always get a tarball of the current git master by going here: > > https://github.com/matplotlib/matplotlib > > clicking on "Download" and choosing one of the "download source" options > at the top of the popup box. > > Mike Thanks, but I'm having trouble using that. I downloaded the .zip file, unzipped the archive, moved the folder to C:\Python25\Lib\site-packages, renamed my current matplotlib folder to matplotlib_OLD, ran these commands from the new directory: python setup.py build python setup.py install And finally renamed the new folder to just matplotlib. It is not finding the modules when I go to run it. If revert the names of the folders, my old folder still works. What am I doing wrong? Thanks, Che
I see. Thanks, Ben. -Soumyaroop On Thu, May 12, 2011 at 10:32 AM, Benjamin Root <ben...@ou...> wrote: > On Thursday, May 12, 2011, Soumyaroop Roy <roy...@gm...> wrote: >> Here's a short follow up question: >> Is there a concept of erasing in matplotlib? If I were to erase an >> axvline that I drew earlier, how would I do that? Can you use del to >> delete the object and then force a redraw? >> >> -Soumyaroop >> >> On Mon, May 2, 2011 at 11:35 AM, Soumyaroop Roy >> <roy...@gm...> wrote: >>> Thanks Justin. I have the event handling thing in place and was really >>> looking for drawing options. Thanks for the tips. I'll look into them. >>> regards, >>> Soumyaroop >>> >>> On Mon, May 2, 2011 at 11:06 AM, Justin McCann <jn...@gm...> wrote: >>>> >>>> You'll want to use event handling to figure out where the user clicked, >>>> and then you have a couple of options: Axes.vlines(), or pylab.axvline(). It >>>> seems like pylab.axvline() will always span the entire y-axis by default, >>>> but with Axes.vlines() you need to specify the ymin/ymax. Maybe someone else >>>> knows of an argument to pass to Axes.vlines() that will always span the >>>> entire y-axis. >>>> Here's the code (assuming 'ipython -pylab'): >>>> ======== >>>> fig = figure() >>>> plot([1,2,3,4], [5,6,7,8]) >>>> def onclick(event): >>>> """Draw a vertical line spanning the axes every time the user clicks >>>> inside them""" >>>> if event.inaxes: # make sure the click was within a set of axes >>>> pylab.axvline(event.xdata, axes=event.inaxes, color='r', >>>> linestyle=':') # red dotted line >>>> event.inaxes.figure.canvas.draw() # force a re-draw >>>> cid = fig.canvas.mpl_connect('button_press_event', onclick) # add the >>>> click handler >>>> ... interact with it >>>> fig.canvas.mpl_disconnect(cid) # get rid of the click-handler >>>> ======== >>>> Docs: >>>> Axes.vlines(): >>>> http://matplotlib.sourceforge.net/api/axes_api.html#matplotlib.axes.Axes.vlines >>>> pyplot.axvline(): >>>> http://matplotlib.sourceforge.net/api/pyplot_api.html#matplotlib.pyplot.axvline >>>> Event >>>> handling: http://matplotlib.sourceforge.net/users/event_handling.html >>>> >>>> Example: http://matplotlib.sourceforge.net/examples/event_handling/data_browser.html >>>> Justin >>>> >>>> On Mon, May 2, 2011 at 10:08 AM, Soumyaroop Roy <roy...@gm...> >>>> wrote: >>>>> >>>>> Any pointers on this? >>>>> On Sat, Apr 30, 2011 at 12:34 AM, Soumyaroop Roy >>>>> <roy...@gm...> wrote: >>>>>> >>>>>> Hi there: >>>>>> I have an x-y plot and I want to draw a vertical marker (an x=c line) on >>>>>> the plot on a mouse click. >>>>>> How should I approach it? >>>>>> regards, >>>>>> Soumyaroop >>>>> >>>>> > > No, don't use del. If you save the object returned by the call to > axvline, then you should be able to call its .remove() method. > > That should do the proper bookkeeping. > > Ben Root >
You can always get a tarball of the current git master by going here: https://github.com/matplotlib/matplotlib clicking on "Download" and choosing one of the "download source" options at the top of the popup box. Mike On 05/11/2011 11:07 AM, C M wrote: > On Wed, May 11, 2011 at 11:07 AM, C M<cmp...@gm...> wrote: > >> On Wed, May 11, 2011 at 12:29 AM, Jae-Joon Lee<lee...@gm...> wrote: >> >>> I think I fixed a similar bug at some point but I'm not sure if that >>> is related with this. >>> Are you using the *make_axes_area_auto_adjustable* from the current >>> git master (check >>> examples/axes_grid/make_room_for_ylabel_using_axesgrid.py)? If not can >>> you try that? Also please post your code. >>> >> > I have not set up with git since Matplotlib made the change from svn. > I just downloaded git to get started but don't know how to use it yet; > for now is there a way to just check out the files I need to test > this, or is there some other (non-git) way to get this update? > > Thanks, > Che > > ------------------------------------------------------------------------------ > Achieve unprecedented app performance and reliability > What every C/C++ and Fortran developer should know. > Learn how Intel has extended the reach of its next-generation tools > to help boost performance applications - inlcuding clusters. > http://p.sf.net/sfu/intel-dev2devmay > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > -- Michael Droettboom Science Software Branch Space Telescope Science Institute Baltimore, Maryland, USA
On Thursday, May 12, 2011, Soumyaroop Roy <roy...@gm...> wrote: > Here's a short follow up question: > Is there a concept of erasing in matplotlib? If I were to erase an > axvline that I drew earlier, how would I do that? Can you use del to > delete the object and then force a redraw? > > -Soumyaroop > > On Mon, May 2, 2011 at 11:35 AM, Soumyaroop Roy > <roy...@gm...> wrote: >> Thanks Justin. I have the event handling thing in place and was really >> looking for drawing options. Thanks for the tips. I'll look into them. >> regards, >> Soumyaroop >> >> On Mon, May 2, 2011 at 11:06 AM, Justin McCann <jn...@gm...> wrote: >>> >>> You'll want to use event handling to figure out where the user clicked, >>> and then you have a couple of options: Axes.vlines(), or pylab.axvline(). It >>> seems like pylab.axvline() will always span the entire y-axis by default, >>> but with Axes.vlines() you need to specify the ymin/ymax. Maybe someone else >>> knows of an argument to pass to Axes.vlines() that will always span the >>> entire y-axis. >>> Here's the code (assuming 'ipython -pylab'): >>> ======== >>> fig = figure() >>> plot([1,2,3,4], [5,6,7,8]) >>> def onclick(event): >>> """Draw a vertical line spanning the axes every time the user clicks >>> inside them""" >>> if event.inaxes: # make sure the click was within a set of axes >>> pylab.axvline(event.xdata, axes=event.inaxes, color='r', >>> linestyle=':') # red dotted line >>> event.inaxes.figure.canvas.draw() # force a re-draw >>> cid = fig.canvas.mpl_connect('button_press_event', onclick) # add the >>> click handler >>> ... interact with it >>> fig.canvas.mpl_disconnect(cid) # get rid of the click-handler >>> ======== >>> Docs: >>> Axes.vlines(): >>> http://matplotlib.sourceforge.net/api/axes_api.html#matplotlib.axes.Axes.vlines >>> pyplot.axvline(): >>> http://matplotlib.sourceforge.net/api/pyplot_api.html#matplotlib.pyplot.axvline >>> Event >>> handling: http://matplotlib.sourceforge.net/users/event_handling.html >>> >>> Example: http://matplotlib.sourceforge.net/examples/event_handling/data_browser.html >>> Justin >>> >>> On Mon, May 2, 2011 at 10:08 AM, Soumyaroop Roy <roy...@gm...> >>> wrote: >>>> >>>> Any pointers on this? >>>> On Sat, Apr 30, 2011 at 12:34 AM, Soumyaroop Roy >>>> <roy...@gm...> wrote: >>>>> >>>>> Hi there: >>>>> I have an x-y plot and I want to draw a vertical marker (an x=c line) on >>>>> the plot on a mouse click. >>>>> How should I approach it? >>>>> regards, >>>>> Soumyaroop >>>> >>>> No, don't use del. If you save the object returned by the call to axvline, then you should be able to call its .remove() method. That should do the proper bookkeeping. Ben Root
Hello again, I tried the script you provided to test the PolyCollection and that works fine. I am working under Mac OS X 10.6.6 Snow Leopard and use matplotlib 1.0.1. That is the script where I fail with eps but not with pdf: import matplotlib.pyplot as plt import numpy from scipy import stats p=0.3 m=0 s1min=120 s1max=140 s2min=1200 s2max=1600 x = numpy.arange((s2max*-1.5), (s2max*1.5), 0.2) def pdf(x,s1,s2): return p * stats.norm.pdf(x, loc=m, scale=s1) + (1-p) * stats.norm.pdf(x, loc=m, scale=s2) pdf_min = pdf(x,s1min,s2min) pdf_max = pdf(x,s1max,s2max) plt.plot(x, pdf_min, x, pdf_max, color="k") plt.fill_between(x, pdf_min, pdf_max, color='0.85') #plt.show() #plt.savefig("testplot.eps") plt.savefig("testplot.pdf") /Johannes Am 12.05.2011 um 15:28 schrieb John Hunter: > > > On Thu, May 12, 2011 at 3:42 AM, Johannes Radinger <JRa...@gm...> wrote: > Hello , > > sofar I know how to safe a plot into a *.eps file and it works good, > but there is one issue with filled areas between two functions. > > When I try to use: > plt.fill_between(x, pdf_min, pdf_max, color='0.85') > > and I try to open it on my mac I fail. So far as I know > is the mac converting the eps internally to pdf to be > displayed, but it seems it can't be converted. > > If I try to set the output to *.pdf it works perfectly and I can > open the file. Something in the combination of fill_between > and eps is causing the error. I tried also color="red" but with > the same problems. > > Is there anything I've to set because I need the output as > a working eps. > > > under the hool, fill_between uses a PolyCollection. Below is a simple example which uses a PolyCollection directly. Does this crash when you convert eps -> pdf. If not, maybe we can hone in on what is special about the vertices in your fill_between example. Also, you should give us some information about what version of matplotlib and OSX you are running. > > > import numpy as np > import matplotlib.collections as mcollections > import matplotlib.pyplot as plt > > theta = np.linspace(0, 2*np.pi, 20) > x1 = np.cos(theta) > y1 = np.sin(theta) > > x2 = x1 + 5 > y2 = y1 + 5 > > verts1 = zip(x1, y1) > verts2 = zip(x2, y2) > > c = mcollections.PolyCollection([verts1, verts2], facecolors=['red', 'green']) > > ax = plt.subplot(111) > ax.add_collection(c) > ax.axis([-5, 10, -5, 10]) > > plt.savefig('test.eps') > plt.show() >
Here's a short follow up question: Is there a concept of erasing in matplotlib? If I were to erase an axvline that I drew earlier, how would I do that? Can you use del to delete the object and then force a redraw? -Soumyaroop On Mon, May 2, 2011 at 11:35 AM, Soumyaroop Roy <roy...@gm...> wrote: > Thanks Justin. I have the event handling thing in place and was really > looking for drawing options. Thanks for the tips. I'll look into them. > regards, > Soumyaroop > > On Mon, May 2, 2011 at 11:06 AM, Justin McCann <jn...@gm...> wrote: >> >> You'll want to use event handling to figure out where the user clicked, >> and then you have a couple of options: Axes.vlines(), or pylab.axvline(). It >> seems like pylab.axvline() will always span the entire y-axis by default, >> but with Axes.vlines() you need to specify the ymin/ymax. Maybe someone else >> knows of an argument to pass to Axes.vlines() that will always span the >> entire y-axis. >> Here's the code (assuming 'ipython -pylab'): >> ======== >> fig = figure() >> plot([1,2,3,4], [5,6,7,8]) >> def onclick(event): >> """Draw a vertical line spanning the axes every time the user clicks >> inside them""" >> if event.inaxes: # make sure the click was within a set of axes >> pylab.axvline(event.xdata, axes=event.inaxes, color='r', >> linestyle=':') # red dotted line >> event.inaxes.figure.canvas.draw() # force a re-draw >> cid = fig.canvas.mpl_connect('button_press_event', onclick) # add the >> click handler >> ... interact with it >> fig.canvas.mpl_disconnect(cid) # get rid of the click-handler >> ======== >> Docs: >> Axes.vlines(): >> http://matplotlib.sourceforge.net/api/axes_api.html#matplotlib.axes.Axes.vlines >> pyplot.axvline(): >> http://matplotlib.sourceforge.net/api/pyplot_api.html#matplotlib.pyplot.axvline >> Event >> handling: http://matplotlib.sourceforge.net/users/event_handling.html >> >> Example: http://matplotlib.sourceforge.net/examples/event_handling/data_browser.html >> Justin >> >> On Mon, May 2, 2011 at 10:08 AM, Soumyaroop Roy <roy...@gm...> >> wrote: >>> >>> Any pointers on this? >>> On Sat, Apr 30, 2011 at 12:34 AM, Soumyaroop Roy >>> <roy...@gm...> wrote: >>>> >>>> Hi there: >>>> I have an x-y plot and I want to draw a vertical marker (an x=c line) on >>>> the plot on a mouse click. >>>> How should I approach it? >>>> regards, >>>> Soumyaroop >>> >>> >>> ------------------------------------------------------------------------------ >>> WhatsUp Gold - Download Free Network Management Software >>> The most intuitive, comprehensive, and cost-effective network >>> management toolset available today. Delivers lowest initial >>> acquisition cost and overall TCO of any competing solution. >>> http://p.sf.net/sfu/whatsupgold-sd >>> _______________________________________________ >>> Matplotlib-users mailing list >>> Mat...@li... >>> https://lists.sourceforge.net/lists/listinfo/matplotlib-users >>> >> > >
On Thu, May 12, 2011 at 3:42 AM, Johannes Radinger <JRa...@gm...> wrote: > Hello , > > sofar I know how to safe a plot into a *.eps file and it works good, > but there is one issue with filled areas between two functions. > > When I try to use: > plt.fill_between(x, pdf_min, pdf_max, color='0.85') > > and I try to open it on my mac I fail. So far as I know > is the mac converting the eps internally to pdf to be > displayed, but it seems it can't be converted. > > If I try to set the output to *.pdf it works perfectly and I can > open the file. Something in the combination of fill_between > and eps is causing the error. I tried also color="red" but with > the same problems. > > Is there anything I've to set because I need the output as > a working eps. > under the hool, fill_between uses a PolyCollection. Below is a simple example which uses a PolyCollection directly. Does this crash when you convert eps -> pdf. If not, maybe we can hone in on what is special about the vertices in your fill_between example. Also, you should give us some information about what version of matplotlib and OSX you are running. import numpy as np import matplotlib.collections as mcollections import matplotlib.pyplot as plt theta = np.linspace(0, 2*np.pi, 20) x1 = np.cos(theta) y1 = np.sin(theta) x2 = x1 + 5 y2 = y1 + 5 verts1 = zip(x1, y1) verts2 = zip(x2, y2) c = mcollections.PolyCollection([verts1, verts2], facecolors=['red', 'green']) ax = plt.subplot(111) ax.add_collection(c) ax.axis([-5, 10, -5, 10]) plt.savefig('test.eps') plt.show()
Hello, I am trying to generate on the fly a non linear rainbow colorbar as in picture Colorbar below. I use a slider to automatically modify the aspect of the colorbar (see code below). This works fine except that I want to have a different behaviour of the colorbar when moving the slider: My wish is to have the limits of the colorbar remain fixed (cmin and cmax), but the rainbow range should be shrinked (though the tick label of the colorbar should not be modified). I am seaching around using matplotlib.colors.LinearSegmentedColormap without any success. Should in this case the colormap be completly re created each time the slider moves, or is it possible using any kwargs to automatically change the behaviour of the colorbar as I wanted ? Many thanks in advance for any help... See example below, where the colorbar cmax limit is changed, whereas I wanted that it remains fixed and the shape of the colorbar rainbow decreases. from matplotlib.pylab import * import matplotlib.pyplot as plt from matplotlib.widgets import Slider sizeX = 4 sizeY = 21 dims = ( sizeY, sizeX ) data = zeros( dims ) for x in range( 0, sizeX ): for y in range( 0, sizeY ): data[ y, x ] = y figure = plt.figure() axes = figure.add_subplot( 111 ) figure.subplots_adjust(left=0.25, bottom=0.25) cax = axes.matshow( data, aspect = 'auto', interpolation = 'nearest' ) col = figure.colorbar( cax, spacing='proportional', extend='min' ) vmax = 50 axmax = figure.add_axes([0.25, 0.15, 0.65, 0.03], axisbg='lightgoldenrodyellow') smax = Slider( axmax, 'Max', 0, vmax, valinit = vmax ) cax.set_clim( vmin = 0, vmax = vmax ) def update(val): cax.set_clim( vmin = 0, vmax = smax.val ) figure.canvas.draw() smax.on_changed( update ) http://old.nabble.com/file/p31602280/Colorbar.png Colorbar.png -- View this message in context: http://old.nabble.com/Creating-non-linear-colorbar-Colorbar-tp31602280p31602280.html Sent from the matplotlib - users mailing list archive at Nabble.com.
Hello , sofar I know how to safe a plot into a *.eps file and it works good, but there is one issue with filled areas between two functions. When I try to use: plt.fill_between(x, pdf_min, pdf_max, color='0.85') and I try to open it on my mac I fail. So far as I know is the mac converting the eps internally to pdf to be displayed, but it seems it can't be converted. If I try to set the output to *.pdf it works perfectly and I can open the file. Something in the combination of fill_between and eps is causing the error. I tried also color="red" but with the same problems. Is there anything I've to set because I need the output as a working eps. /johannes
On Thu, May 12, 2011 at 7:18 AM, David Andrews <irb...@gm...> wrote: > I'm quite interested in getting involved with mpl development, partly > as a way to get my head around python & numpy and aid porting a bunch > of stuff I use over to python from IDL. Unless I'm doing something > totally wrong by expecting the above snippet to work, then I'd happily > spend some time looking into this in more detail, having written some > similar code in IDL. The docs for that module also look like they > could benefit from some work. > Yes, the docs need lots of work I guess and any contribution will be greatly appreciated. If you're willing to improve the docs for gridspec, I'm more than happy to help you (I am the main author of that module). The best way to contribute is to use github pull request and matplotlib is hosted here https://github.com/matplotlib/matplotlib Regards, -JJ
Yes, this is a bug that has been fixed. https://github.com/matplotlib/matplotlib/commit/76851eb Regards, -JJ On Thu, May 12, 2011 at 7:53 AM, Goyo <goy...@gm...> wrote: > 2011年5月12日 David Andrews <irb...@gm...>: >> Hi, >> >> I've come across something I don't entirely understand in the >> behaviour of gridspec. It's not obvious from the code & docs for this >> module, but is it only supposed to be able to deal with 'square' >> layouts, e.g. 3x3, 4x4 etc? >> >> Taking some code from an example on the gridspec page ... >> >> import matplotlib.pylab as plt >> import matplotlib.gridspec as gridspec >> #gs = gridspec.GridSpec(3, 3) # OK >> gs = gridspec.GridSpec(6, 3) # Will cause an error later on >> ax1 = plt.subplot(gs[0, :]) >> ax2 = plt.subplot(gs[1,:-1]) >> ax3 = plt.subplot(gs[1:,-1]) >> ax4 = plt.subplot(gs[-1,0]) >> ax5 = plt.subplot(gs[-1,-2]) >> plt.show() >> >> ... will fail if that line is uncommented, giving an index error. > > Works for me. > Ubuntu 11.04 Natty, stock python 2.7.1 and matplotlib 1.0.1 from > https://launchpad.net/~valavanisalex/+archive/matplotlib. > > ------------------------------------------------------------------------------ > Achieve unprecedented app performance and reliability > What every C/C++ and Fortran developer should know. > Learn how Intel has extended the reach of its next-generation tools > to help boost performance applications - inlcuding clusters. > http://p.sf.net/sfu/intel-dev2devmay > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users >
On Thu, May 12, 2011 at 2:59 AM, Benjamin Root <ben...@ou...> wrote: > Most things, we do know the sizes of. It is my understanding that it is the > text objects that is the unknown. If this could be solved, then a layout > engine would be much more feasible. I doubt it. As far as I know, the main reason that things needed to be drawn is because the location and size of some artist depends on location and size of other artists. Unfortunately, with current matplotlib code, most of these things are determined inside the "draw" method. Therefore, we need to separate out those things out from the draw method. Another option, which I think is more feasible, is to implement a BBoxRenderer which does not draw anything but only update the size and location of artists. Regards, -JJ > The problem is that even LaTeX has to > re-render things multiple times to get this right for an arbitrary font. If > we were to restrict ourselves to particular fonts and package those fonts > with matplotlib, then we could have an internal table of size information > for each glyph and compute it on the fly and lay everything out right. But, > that would cause us to give up significant benefits for another benefit.
On Thu, May 12, 2011 at 2:37 AM, Brendan Barnwell <bre...@br...> wrote: > One thing I've always wondered: is it fundamentally impossible to change the > fact that, in matplotlib, you cannot know how big a drawn object will be > until you actually draw it? Well, I don't think this is 100% correct. As far as I can see, there is two issues involved. 1) size of text may depend on the renderer (since font selection could be different). 2) Position of some artist depend on position of other artist (e.g., the exact location of axis label depend on sizes of tick labels). In fact, neither of these "require" drawing. But, the easiest way is to draw it (primarily due to the second point). Can you describe what you were doing with your animation? Matplotlib provide some framework to overcome these limitation (e.g., classes in the offsetbox module). And there may be easier ways that does what you want. Regards, -JJ