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Hi, I have a plot that covers a 10 day period on its x-axis in seconds. I would like to change it to julian days, is this possible with matplotlib and if so how do I do it?? D
Hi, I am trying to produce a spectrogram for my data set and am having an issue with the color map. My data is filtered between 0.02 and 1.0Hz, but specgram() produces an image in the range 0 to 10Hz. Also the color map is not set properly. I would like to have it so the colormap ranges from the min and max powers obtained by specgram. Anyone know how to do this? My code is below. Pxx, freqs, bins, im = plt.specgram(data, NFFT=nfft, Fs=sps, detrend=py.detrend_none, window=py.window_hanning, noverlap=nfft/2, cmap=None, xextent=None, pad_to=None, sides='default', scale_by_freq=None) plt.ylim(0,1) plt.colorbar() plt.show() thanks, D
On 2/1/12 9:39 AM, Jeff Whitaker wrote: > On 2/1/12 9:15 AM, Benjamin Root wrote: >> >> >> On Wed, Feb 1, 2012 at 9:59 AM, Alexis Praga <ale...@fr... >> <mailto:ale...@fr...>> wrote: >> >> Hi, >> >> I have not found any documentation on plotting non regular data with >> basemap *without* interpolation. >> Plotting scattered data on the sphere works fine, but the size of >> each >> point seems to be limited, so there are "holes". >> Is there an option in basemap for that ? >> >> >> Alexis >> >> >> pcolor might be what you want (not pcolormesh()). I use it to plot >> radar data when there might be gaps in the coverage. >> >> Ben Root > > To do this you will have to bin your data into rectangular grid boxes, > filling a masked array (with the grid boxes that have no data > masked). There's some code to this at > > http://www.scipy.org/Cookbook/Matplotlib/Gridding_irregularly_spaced_data > > -Jeff and here's an example of how to do this with the matplotlib hexbin function... from numpy.random import uniform import matplotlib.pyplot as plt import numpy as np from mpl_toolkits.basemap import Basemap npts = 5000 m = Basemap(lon_0=270, boundinglat=20, projection='npstere') # create randomly distributed points in map projection coordinates x = uniform(m.xmin,m.xmax,npts) y = uniform(m.ymin,m.ymax,npts) xscaled = 4.*(x-0.5*(m.xmax-m.xmin))/m.xmax yscaled = 4.*(y-0.5*(m.ymax-m.ymin))/m.ymax # z is the data to plot at those points. z = xscaled*np.exp(-xscaled**2-yscaled**2) CS = plt.hexbin(x,y,C=z,gridsize=50,cmap=plt.cm.jet) m.drawcoastlines() m.drawparallels(np.arange(0,81,20)) m.drawmeridians(np.arange(-180,181,60)) m.colorbar() # draw colorbar plt.show() -Jeff -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX : (303)497-6449 NOAA/OAR/PSD R/PSD1 Email : Jef...@no... 325 Broadway Office : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg
On 2/1/12 9:15 AM, Benjamin Root wrote: > > > On Wed, Feb 1, 2012 at 9:59 AM, Alexis Praga <ale...@fr... > <mailto:ale...@fr...>> wrote: > > Hi, > > I have not found any documentation on plotting non regular data with > basemap *without* interpolation. > Plotting scattered data on the sphere works fine, but the size of each > point seems to be limited, so there are "holes". > Is there an option in basemap for that ? > > > Alexis > > > pcolor might be what you want (not pcolormesh()). I use it to plot > radar data when there might be gaps in the coverage. > > Ben Root To do this you will have to bin your data into rectangular grid boxes, filling a masked array (with the grid boxes that have no data masked). There's some code to this at http://www.scipy.org/Cookbook/Matplotlib/Gridding_irregularly_spaced_data -Jeff -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX : (303)497-6449 NOAA/OAR/PSD R/PSD1 Email : Jef...@no... 325 Broadway Office : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg
On Wed, Feb 1, 2012 at 9:59 AM, Alexis Praga <ale...@fr...> wrote: > Hi, > > I have not found any documentation on plotting non regular data with > basemap *without* interpolation. > Plotting scattered data on the sphere works fine, but the size of each > point seems to be limited, so there are "holes". > Is there an option in basemap for that ? > > > Alexis > > pcolor might be what you want (not pcolormesh()). I use it to plot radar data when there might be gaps in the coverage. Ben Root
Hi, I have not found any documentation on plotting non regular data with basemap *without* interpolation. Plotting scattered data on the sphere works fine, but the size of each point seems to be limited, so there are "holes". Is there an option in basemap for that ? Alexis
On 2/1/12 7:11 AM, Ivan Lima wrote: > You can also install the Enthought Python Distribution (EPD > http://enthought.com/products/epd.php). It comes with everything > (NumPy, Matplotlib, IPython, etc) and it is very easy to install on a > Mac. > > - Ivan > -- > Ivan Lima > Woods Hole Oceanographic Institution, MC&G MS #25 > 360 Woods Hole Road, Woods Hole, MA 02543-1543 USA Another relatively painless option is macports (http://macports.org), which has matplotlib-1.1.0 and basemap-1.0.2. For me it was as simple as sudo port install py27-matplotlib -Jeff > > > > On Fri, Jan 13, 2012 at 21:41, Andrew<and...@ya...> wrote: >> Hi >> >> Hi, >> >> I am having troubles getting matplotlib to install. I have mac os X lion with Xcode 4.2.1 installed and I have used git to get the latest version of matplotlib. I am also running python 2.7.2 from the python.org site. The installation process was going fine based on the make.osx file supplied . The only thing I had to do was add a symbolic link to map gcc-4.2 to gcc to get it to compile, the I hit the following problem: >> >> gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -isysroot /Developer/SDKs/MacOSX10.6.sdk -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I. -I/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/freetype2 -I./freetype2 -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/ft2font.cpp -o build/temp.macosx-10.6-intel-2.7/src/ft2font.o >> In file included from src/ft2font.cpp:3: >> src/ft2font.h:16:22: error: ft2build.h: No such file or directory >> src/ft2font.h:17:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:18:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:19:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:20:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:21:10: error: #include expects "FILENAME" or<FILENAME> >> In file included from src/ft2font.cpp:3: >> src/ft2font.h:34: error: ‘FT_Bitmap’ has not been declared >> src/ft2font.h:34: error: ‘FT_Int’ has not been declared >> src/ft2font.h:34: error: ‘FT_Int’ has not been declared >> src/ft2font.h:86: error: expected ‘,’ or ‘...’ before ‘&’ token >> src/ft2font.h:86: error: ISO C++ forbids declaration of ‘FT_Face’ with no type >> src/ft2font.h:131: error: ‘FT_Face’ does not name a type >> src/ft2font.h:132: error: ‘FT_Matrix’ does not name a type >> src/ft2font.h:133: error: ‘FT_Vector’ does not name a type >> src/ft2font.h:134: error: ‘FT_Error’ does not name a type >> src/ft2font.h:135: error: ‘FT_Glyph’ was not declared in this scope >> src/ft2font.h:135: error: template argument 1 is invalid >> src/ft2font.h:135: error: template argument 2 is invalid >> src/ft2font.h:136: error: ‘FT_Vector’ was not declared in this scope >> src/ft2font.h:136: error: template argument 1 is invalid >> src/ft2font.h:136: error: template argument 2 is invalid >> src/ft2font.h:141: error: ‘FT_BBox’ does not name a type >> src/ft2font.cpp:51: error: ‘FT_Library’ does not name a type >> src/ft2font.cpp:116: error: variable or field ‘draw_bitmap’ declared void >> src/ft2font.cpp:116: error: ‘FT_Bitmap’ was not declared in this scope >> src/ft2font.cpp:116: error: ‘bitmap’ was not declared in this scope >> src/ft2font.cpp:117: error: ‘FT_Int’ was not declared in this scope >> src/ft2font.cpp:118: error: ‘FT_Int’ was not declared in this scope >> In file included from src/ft2font.cpp:3: >> src/ft2font.h:16:22: error: ft2build.h: No such file or directory >> src/ft2font.h:17:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:18:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:19:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:20:10: error: #include expects "FILENAME" or<FILENAME> >> src/ft2font.h:21:10: error: #include expects "FILENAME" or<FILENAME> >> In file included from src/ft2font.cpp:3: >> src/ft2font.h:34: error: ‘FT_Bitmap’ has not been declared >> src/ft2font.h:34: error: ‘FT_Int’ has not been declared >> src/ft2font.h:34: error: ‘FT_Int’ has not been declared >> src/ft2font.h:86: error: expected ‘,’ or ‘...’ before ‘&’ token >> src/ft2font.h:86: error: ISO C++ forbids declaration of ‘FT_Face’ with no type >> src/ft2font.h:131: error: ‘FT_Face’ does not name a type >> src/ft2font.h:132: error: ‘FT_Matrix’ does not name a type >> src/ft2font.h:133: error: ‘FT_Vector’ does not name a type >> src/ft2font.h:134: error: ‘FT_Error’ does not name a type >> src/ft2font.h:135: error: ‘FT_Glyph’ was not declared in this scope >> src/ft2font.h:135: error: template argument 1 is invalid >> src/ft2font.h:135: error: template argument 2 is invalid >> src/ft2font.h:136: error: ‘FT_Vector’ was not declared in this scope >> src/ft2font.h:136: error: template argument 1 is invalid >> src/ft2font.h:136: error: template argument 2 is invalid >> src/ft2font.h:141: error: ‘FT_BBox’ does not name a type >> src/ft2font.cpp:51: error: ‘FT_Library’ does not name a type >> src/ft2font.cpp:116: error: variable or field ‘draw_bitmap’ declared void >> src/ft2font.cpp:116: error: ‘FT_Bitmap’ was not declared in this scope >> src/ft2font.cpp:116: error: ‘bitmap’ was not declared in this scope >> src/ft2font.cpp:117: error: ‘FT_Int’ was not declared in this scope >> src/ft2font.cpp:118: error: ‘FT_Int’ was not declared in this scope >> lipo: can't figure out the architecture type of: /var/folders/2d/t8xdmbdj103bmcjbm72j49980000gp/T//ccOY6Ibr.out >> error: command 'gcc-4.2' failed with exit status 1 >> >> Any thoughts on how to fix it? >> >> thanks, Andrew >> ------------------------------------------------------------------------------ >> Keep Your Developer Skills Current with LearnDevNow! >> The most comprehensive online learning library for Microsoft developers >> is just 99ドル.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, >> Metro Style Apps, more. Free future releases when you subscribe now! >> http://p.sf.net/sfu/learndevnow-d2d >> _______________________________________________ >> Matplotlib-users mailing list >> Mat...@li... >> https://lists.sourceforge.net/lists/listinfo/matplotlib-users >> > > ------------------------------------------------------------------------------ > Keep Your Developer Skills Current with LearnDevNow! > The most comprehensive online learning library for Microsoft developers > is just 99ドル.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-d2d > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX : (303)497-6449 NOAA/OAR/PSD R/PSD1 Email : Jef...@no... 325 Broadway Office : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg
You can also install the Enthought Python Distribution (EPD http://enthought.com/products/epd.php). It comes with everything (NumPy, Matplotlib, IPython, etc) and it is very easy to install on a Mac. - Ivan -- Ivan Lima Woods Hole Oceanographic Institution, MC&G MS #25 360 Woods Hole Road, Woods Hole, MA 02543-1543 USA On Fri, Jan 13, 2012 at 21:41, Andrew <and...@ya...> wrote: > Hi > > Hi, > > I am having troubles getting matplotlib to install. I have mac os X lion with Xcode 4.2.1 installed and I have used git to get the latest version of matplotlib. I am also running python 2.7.2 from the python.org site. The installation process was going fine based on the make.osx file supplied . The only thing I had to do was add a symbolic link to map gcc-4.2 to gcc to get it to compile, the I hit the following problem: > > gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -isysroot /Developer/SDKs/MacOSX10.6.sdk -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I. -I/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/freetype2 -I./freetype2 -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/ft2font.cpp -o build/temp.macosx-10.6-intel-2.7/src/ft2font.o > In file included from src/ft2font.cpp:3: > src/ft2font.h:16:22: error: ft2build.h: No such file or directory > src/ft2font.h:17:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:18:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:19:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:20:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:21:10: error: #include expects "FILENAME" or <FILENAME> > In file included from src/ft2font.cpp:3: > src/ft2font.h:34: error: ‘FT_Bitmap’ has not been declared > src/ft2font.h:34: error: ‘FT_Int’ has not been declared > src/ft2font.h:34: error: ‘FT_Int’ has not been declared > src/ft2font.h:86: error: expected ‘,’ or ‘...’ before ‘&’ token > src/ft2font.h:86: error: ISO C++ forbids declaration of ‘FT_Face’ with no type > src/ft2font.h:131: error: ‘FT_Face’ does not name a type > src/ft2font.h:132: error: ‘FT_Matrix’ does not name a type > src/ft2font.h:133: error: ‘FT_Vector’ does not name a type > src/ft2font.h:134: error: ‘FT_Error’ does not name a type > src/ft2font.h:135: error: ‘FT_Glyph’ was not declared in this scope > src/ft2font.h:135: error: template argument 1 is invalid > src/ft2font.h:135: error: template argument 2 is invalid > src/ft2font.h:136: error: ‘FT_Vector’ was not declared in this scope > src/ft2font.h:136: error: template argument 1 is invalid > src/ft2font.h:136: error: template argument 2 is invalid > src/ft2font.h:141: error: ‘FT_BBox’ does not name a type > src/ft2font.cpp:51: error: ‘FT_Library’ does not name a type > src/ft2font.cpp:116: error: variable or field ‘draw_bitmap’ declared void > src/ft2font.cpp:116: error: ‘FT_Bitmap’ was not declared in this scope > src/ft2font.cpp:116: error: ‘bitmap’ was not declared in this scope > src/ft2font.cpp:117: error: ‘FT_Int’ was not declared in this scope > src/ft2font.cpp:118: error: ‘FT_Int’ was not declared in this scope > In file included from src/ft2font.cpp:3: > src/ft2font.h:16:22: error: ft2build.h: No such file or directory > src/ft2font.h:17:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:18:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:19:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:20:10: error: #include expects "FILENAME" or <FILENAME> > src/ft2font.h:21:10: error: #include expects "FILENAME" or <FILENAME> > In file included from src/ft2font.cpp:3: > src/ft2font.h:34: error: ‘FT_Bitmap’ has not been declared > src/ft2font.h:34: error: ‘FT_Int’ has not been declared > src/ft2font.h:34: error: ‘FT_Int’ has not been declared > src/ft2font.h:86: error: expected ‘,’ or ‘...’ before ‘&’ token > src/ft2font.h:86: error: ISO C++ forbids declaration of ‘FT_Face’ with no type > src/ft2font.h:131: error: ‘FT_Face’ does not name a type > src/ft2font.h:132: error: ‘FT_Matrix’ does not name a type > src/ft2font.h:133: error: ‘FT_Vector’ does not name a type > src/ft2font.h:134: error: ‘FT_Error’ does not name a type > src/ft2font.h:135: error: ‘FT_Glyph’ was not declared in this scope > src/ft2font.h:135: error: template argument 1 is invalid > src/ft2font.h:135: error: template argument 2 is invalid > src/ft2font.h:136: error: ‘FT_Vector’ was not declared in this scope > src/ft2font.h:136: error: template argument 1 is invalid > src/ft2font.h:136: error: template argument 2 is invalid > src/ft2font.h:141: error: ‘FT_BBox’ does not name a type > src/ft2font.cpp:51: error: ‘FT_Library’ does not name a type > src/ft2font.cpp:116: error: variable or field ‘draw_bitmap’ declared void > src/ft2font.cpp:116: error: ‘FT_Bitmap’ was not declared in this scope > src/ft2font.cpp:116: error: ‘bitmap’ was not declared in this scope > src/ft2font.cpp:117: error: ‘FT_Int’ was not declared in this scope > src/ft2font.cpp:118: error: ‘FT_Int’ was not declared in this scope > lipo: can't figure out the architecture type of: /var/folders/2d/t8xdmbdj103bmcjbm72j49980000gp/T//ccOY6Ibr.out > error: command 'gcc-4.2' failed with exit status 1 > > Any thoughts on how to fix it? > > thanks, Andrew > ------------------------------------------------------------------------------ > Keep Your Developer Skills Current with LearnDevNow! > The most comprehensive online learning library for Microsoft developers > is just 99ドル.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-d2d > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users >