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Thanks. I'll have a look at these tomorrow. It's actually nice to think I'll have some more eyes on this code soon... It's a lot of work keeping up with so many examples when the changes are so fundamental. Cheers, Mike
Mike, In going through examples (on transforms branch immediately before you made the switch), it looks like there are a couple of new bugs in those included by backend_driver.py: 1) legend_demo.py and legend_demo2.py make spurious black blocks, which go away when the plots are redrawn. 2) there is a positioning problem with the table part of table_demo.py. Both of these are seen with the Agg or gtkagg backend; I have not checked other backends. Eric
Migrating to the new matplotlib codebase ======================================== Michael Droettboom has spent the last several months working on the "transforms branch" of matplotlib, in which he rewrote from the ground up the transformation infrastructure in matplotlib, which many found unintuitive and hard to extend. In addition to a cleaner code base, the reorganization allows you to define your own transformations and projections (e.g. map projections) within matplotlib. He has merged his work into the HEAD of the svn trunk, and this will be the basis for future matplotlib releases. If you are a svn user, we encourage you to continue using the trunk as before, but with the understanding that you are now truly on the bleeding edge. Michael has made sure all the examples still pass with the new code base, so for the vast majority of you, I expect to see few problems. But we need to get as many people as possible using the new code base so we can find and fix the remaining problems. We have take the svn code used in the last stable release in the 0.91 series, and made it a maintenance branch so we can still fix bugs and support people who are not ready to migrate to the new transformation infrastructure but nonetheless need access to svn bug fixes. Using the new code ================== To check out the trunk with the latest transforms changes: > svn co https://matplotlib.svn.sourceforge.net/svnroot/matplotlib/trunk/matplotlib If you already have a working copy of the trunk, your next "svn up" will include the latest transforms changes. Before installing, make sure you completely remove the old matplotlib build and install directories, eg: > cd matplotlib > sudo rm -rf build > sudo rm -rf /usr/local/lib/python2.5/site-packages/matplotlib > sudo python setup.py install Using the old svn code ====================== To check out the maintenance branch, in order to commit bugfixes to 0.91.x: > svn co https://matplotlib.svn.sourceforge.net/svnroot/matplotlib/branches/v0_91_maint matplotlib_0_91_maint Any applicable bugfixes on the 0.91.x maintenance branch should be merged into the trunk so they are fixed there as well. Svnmerge.py makes this process rather straightforward, but you may also manually merge if you prefer. Merging bugfixes on the maint branch to the trunk using svnmerge.py ------------------------------------------------------------------- Download svnmerge.py from here: http://www.orcaware.com/svn/wiki/Svnmerge.py >From the working copy of the *trunk* (svnmerge.py always pulls *to* the current working copy), so > svnmerge.py merge to pull in changes from the maintenance branch. Manually resolve any conflicts, if necessary, test them, and then commit with > svn commit -F svnmerge-commit-message.txt (Note the above will stop working when the maintenance branch is abandoned.) API CHANGES in the new transformation infrastructure ==================================================== While Michael worked hard to keep the API mostly unchanged while performing what has been called "open heart surgery on matplotlib", there have been some changes, as discussed below. The primary goal of these changes was to make it easier to extend matplotlib to support new kinds of projections. This is primarily an internal improvement, and the possible user-visible changes it allows are yet to come. These changes are detailed in the API_CHANGES document.
On Tue, Jan 08, 2008 at 04:49:00PM -0500, Michael Droettboom wrote: > I don't think "UR DOIN IT WRONG" is an entirely correct assessment, > however. Much of this change can be considered refactoring wrt to the > high-level public API. Refactoring is often defined (in test driven development) as reworking the codebase given a complete set of tests that pass at the beginning, and should pass at the end. My 2 cents, Gaël
On Jan 8, 2008 1:49 PM, Michael Droettboom <md...@st...> wrote: > Thank you for enlightening us. This overloaded and contentious word > will be replaced. BTW Michael, ready to go when you are JDH
Thank you for enlightening us. This overloaded and contentious word will be replaced. I don't think "UR DOIN IT WRONG" is an entirely correct assessment, however. Much of this change can be considered refactoring wrt to the high-level public API. For instance, I believe basemap only had to change a handful of lines of code to work with the transforms changes. It's "Refactoring with some exceptional edge cases", perhaps? At the lower levels, where matplotlib developers are concerned, however, there may be some necessary changes, and that's what the API_CHANGES and other warnings are for. And in fact, the Wikipedia entry you point to makes references to lower-level interfaces being changed as the result of refactoring. Anyway, Mike Tom Holroyd wrote: > UR DOIN IT WRONG > > http://en.wikipedia.org/wiki/Refactoring > > On Tue, 2008年01月08日 at 10:48 -0800, John Hunter wrote: > >> To check out the trunk with the latest transforms refactoring: > > The word refactoring applies to cases of code cleanup and so on. > Refactoring implies functional equivalence. > > Dr. Tom > -- > There is in the world much filth: so much is true! But the world itself > is not therefore a filthy monster! Thus spoke Zarathustra. > -- Michael Droettboom Science Software Branch Operations and Engineering Division Space Telescope Science Institute Operated by AURA for NASA
UR DOIN IT WRONG http://en.wikipedia.org/wiki/Refactoring On Tue, 2008年01月08日 at 10:48 -0800, John Hunter wrote: > To check out the trunk with the latest transforms refactoring: The word refactoring applies to cases of code cleanup and so on. Refactoring implies functional equivalence. Dr. Tom -- There is in the world much filth: so much is true! But the world itself is not therefore a filthy monster! Thus spoke Zarathustra.
On 2008年1月07日 19:54:38 -1000 Eric Firing <ef...@ha...> wrote: > Andrew Straw wrote: > > Something I haven't seen addressed on the numpy list (or here) is > > using hg or bzr to mirror an svn repository. What would be the > > added advantage to the project of using a DVCS if all the > > DVCS-ophiles would simply sync the svn tree? > > There has been numpy discussion of starting with a read-only mirror. > My sense is that doing two-way synchronization may be possible using > tailor, but it doesn't sound very practical. Without two-way > synchronization, getting changes from the user's DVCS committed back > to svn would be a clumsy process. I'm all for the DVCS concept. I have recently started using git for my own work, including reading the matplotlib repository. git includes built-in tools to talk to svn and cvs repositories. In fact, the reason I chose git over the alternatives (hg, bzr, etc.) is the way it allows me to use DVCS for my own work (and, occasionally, the work of my close collaborators) without requiring a change to an entire project's infrastructure. Using git in this way does not allow one to take advantage of all of the potential DVCS promises, but it goes a long way in the right direction. It's something to consider. Disclaimers: (a) I am not an active matplotlib developer. (b) I really don't want to start a git vs. hg vs. bzr discussion/flamewar. --Jim Amundson
On Jan 8, 2008 8:11 AM, Michael Droettboom <md...@st...> wrote: > Also -- we probably want a news item to say something like this: I just added MIGRATION.txt to the trunk -- after you do the merge, we can post this document to provide the migration instructions. I've tried to add all your text with minor reorganization and added a general introduction. Feel free to edit and add to this document as you see fit, and after you do the merge and new branches, I'll post it and update a news flash on the web site. JDH Migrating to the new matplotlib codebase ======================================== Michael Droettboom has spent the last several month working on the "transforms branch" of matplotlib, in which he rewrote from the ground up the transformation infrastructure in matplotlib, whih many found unintuitive and hard to extend. In addition to a cleaner code base, the refactoring allows you to define your own trasformations and projections (eg map projections) within matplotlib. He has merged his work into the HEAD of the svn trunk, and this will be the basis for future matplotlib releases. If you are a svn user, we encourage you to continue using the trunk as before, but with the understanding that you are now truly on the bleeding edge. Michael has made sure all the examples still pass with the new code base, so for the vast majority of you, I except to see few problems. But we need to get as many people as possible using the new code base so we can find and fix the remaining problems. We have take the svn cde used in the last stable release in the 0.91 series, and made it a maintenance branch so we can still fix bugs and support people who are not ready to migrate to the new transformation infrastructure but nonetheless need acccess to svn bug fixes. The experimental transforms refactoring changes have been merged into SVN trunk. While this version is passing all examples and unit tests, there may be changes that subtly break things that used to work, raise nasty exceptions or kill innocent puppies. To help move matplotlib forward, we encourage all users who are comfortable with the bleeding edge to use the trunk with their own plots and report any bugs to the mailing list. Using the new code ================== To check out the trunk with the latest transforms refactoring: > svn co https://matplotlib.svn.sourceforge.net/svnroot/matplotlib/trunk/matplotlib If you already have a working copy of the trunk, your next "svn up" will include the latest transforms refactoring. Using the old svn code ====================== To check out the maintenance branch, in order to commit bugfixes to 0.91.x: > svn co https://matplotlib.svn.sourceforge.net/svnroot/matplotlib/branches/v0_91_maint matplotlib_0_91_maint Any applicable bugfixes on the 0.91.x should be merged into the trunk so they are fixed there as well. API CHANGES in the new transformation infrastructure ==================================================== While Michael worked hard to keep the API mostly unchanged while performing what has been called "open heart surgery on matplotlib", there have been some changes, as discussed below. The primary goal of this refactoring was to make it easier to extend matplotlib to support new kinds of projections. This is primarily an internal improvement, and the possible user-visible changes it allows are yet to come. These changes are detailed in the API_CHANGES document
Also -- we probably want a news item to say something like this: ==== The experimental transforms refactoring changes have been merged into SVN trunk. While this version is passing all examples and unit tests, there may be changes that subtly break things that used to work, raise nasty exceptions or kill innocent puppies. To help move matplotlib forward, we encourage all users who are comfortable with the bleeding edge to use the trunk with their own plots and report any bugs to the mailing list. If the trunk is not working for you and you just need something that works, download the 0.91.2 release, or check out the 0.91.x maintenance branch from svn: svn co https://matplotlib.svn.sourceforge.net/svnroot/matplotlib/branches/v0_91_maint matplotlib_0_91_maint ==== Mike John Hunter wrote: > Now that the 0.91.2 release is out, I am inclined to merge Michael's > transforms branch into the trunk. Since many people rely on svn, we > probably need to advertise this move broadly, with a news item on the > web page and announcements on the mailing lists, with instructions on > how to checkout the 0.91 maintenance branch (which does not exist but > would be created as the maintenance branch). There was some > suggestion earlier that we leave Michael's work on a branch, but I > think we need to get it on the trunk so developers and svn users will > get it by default which will help us move more rapidly in shaking out > the remaining bugs and problems. > > Michael, since you know more about this than anyone, you should > probably spearhead the svn reorganization and let people know when the > changes become effective with some advance notice. I will update the > website with pointers to the relevant docs (your API_CHANGES and > Changelog and the relevant svn commands and anything else you think we > will need). > > If this seems like a reasonable plan, perhaps we should shoot for > doing this in a day or two. If any of you think this is the wrong > approach, let us know. > > JDH > > ------------------------------------------------------------------------- > Check out the new SourceForge.net Marketplace. > It's the best place to buy or sell services for > just about anything Open Source. > http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace > _______________________________________________ > Matplotlib-devel mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-devel -- Michael Droettboom Science Software Branch Operations and Engineering Division Space Telescope Science Institute Operated by AURA for NASA
John Hunter wrote: > Michael, since you know more about this than anyone, you should > probably spearhead the svn reorganization and let people know when the > changes become effective with some advance notice. I will update the > website with pointers to the relevant docs (your API_CHANGES and > Changelog and the relevant svn commands and anything else you think we > will need). Here's a summary of my plan: 1) Create a tag in tags/v0_91_2 of the exact revision Charlie released as 0.91.2. This is useful to diff against. 2) Create a branch in branches/v0_91_maint that will be used exclusively for bugfixes to 0.91.x, and be the source of any future 0.91.x releases. 3) Merge branches/transforms into trunk/matplotlib Putting the most recent API_CHANGES and CHANGELOG from the transforms branch on the web is a good idea -- however, it should be clear that it applies only to SVN versions, and not the 0.91.2 release. (It's reasonably self-evident to me, but maybe not to everyone). As for svn instructions (applicable after the above changes): ==== To check out the trunk with the latest transforms refactoring: svn co https://matplotlib.svn.sourceforge.net/svnroot/matplotlib/trunk/matplotlib matplotlib If you already have a working copy of the trunk, your next "svn up" will include the latest transforms refactoring. To check out the maintenance branch, in order to commit bugfixes to 0.91.x: svn co https://matplotlib.svn.sourceforge.net/svnroot/matplotlib/branches/v0_91_maint matplotlib_0_91_maint Any applicable bugfixes on the 0.91.x should be merged into the trunk so they are fixed there as well. I will provide further instructions about this (using svnmerge.py) once I have everything in place. ==== Cheers, Mike -- Michael Droettboom Science Software Branch Operations and Engineering Division Space Telescope Science Institute Operated by AURA for NASA
John Hunter wrote: > On Jan 7, 2008 2:37 PM, Eric Firing <ef...@ha...> wrote: > >> (At the moment I can't compile the branch--I just sent Mike a message >> about that off the list, with voluminous output.) >> >> It seems like what is needed is not exactly a merge operation but simply >> a renaming of the trunk and the branch. Maybe some doc files need to be >> merged, but that is about it. Correct? > > Sorry if I used sloppy terminology, all I mean is that Michael's stuff > will become the HEAD of the svn trunk, and the current HEAD of the > trunk will become a branch. No merge will be necessary since Michael > has been merging all changes in the HEAD into his branch on a ongoing > basis. I don't actually know how one does this move in svn, but I > have faith that Michael does. I've been using svnmerge.py http://www.orcaware.com/svn/wiki/Svnmerge.py#Quick_Usage_Overview Essentially, it eliminates the need to remember the last points at which one branch was merged into another (which IMHO is the awful thing about svn's built-in merge). I understand this functionality will be brought into SVN proper in 1.5. It also has a facility to merge the branch back into the trunk once we're ready. (Whether it's technically a merge or a copy, I don't really know -- that's where the line gets blurry. The point is, it should be straightforward.) >> All this brings to mind the discussion taking place over the last week >> on the numpy list regarding switching from svn to bzr or hg. >> http://thread.gmane.org/gmane.comp.python.numeric.general/18130 >> (I have been using hg locally for a couple years, and I like it.) The >> motivation is the greater ease of branching and merging with distributed >> VCS systems in comparison to SVN. In the numpy list discussion, it >> sounds like all participants except Travis favor making the switch. > > I'm personally -1 on this. I prefer to keep things as simple as > possible and do not see the need for a lot of branching, though there > is clearly a need for some. svn is the standard version control > system and has the best install base (now on OS X and all linux > systems), making it easiest for users to get checkouts. If numpy, > ipython and scipy all decide to move, I would probably be inclined to > go along with it for consistency between these packages, but I > wouldn't be leading the charge. I have never felt the need for a > distributed version control system, personally, though some swear by > it. It is probably because mpl has always just had a trunk with no > branches, and I'd like to stick to that as much as possible, > > Michael, how onerous was it for you to do the merges using svn -- this > seems to be the most significant problem with svn in my reading of > David's summary. David Cournapeau seems to have had some non-specific bad experiences with svnmerge.py. I agree, it does force you to be explicit (i.e. set up the branch correctly from the start), unlike a DVCS where it is built-in. But I've had absolutely no problems with it (maybe I'm just lucky). I had hesitated to add to the discussion, since so much has been said already over on numpy. However, besides the merge-tracking (that svnmerge adequately meets for me) I see one other important advantage to DVCS: It's easier to create local and non-official branches (meaning created by developers without write access to the "official" repository), and track changes that aren't really ready to be shared. I worked at a place (that shall remain nameless), that used a centralized VCS, but the culture (as mandated by management) was to commit to the trunk only very rarely, usually right before an alpha or beta cycle. This meant that it was a) hard to keep track of what others were doing, b) there was a high likelihood of conflicts with others (not just at the source code level, but the logical level), c) all the ad-hoc testing that developers do as they write code had to be completely redone after this "merge" and long after the developers had forgotten about what they had written. I'm a strong believer in "continuous integration" of code. It seems to me that at its worst, a DVCS lightly discourages continuous integration because it makes it so easy to go off on tangents, and tangents aren't necessarily always a good thing if the end result is intended to be truly "one product". Tangents are necessary, yes, but their number needs to be somehow limited. This is all a matter of process, of course, and neither approach to version control really prevents any particular process -- I'd just like to make the argument that the "lots of little branches" process that DVCS make so easy, is not necessarily always appropriate. Lastly, it seems to me that there are upteen ways to emulate a DVCS on top of a core repository that is still running on SVN. For instance, I used SVK (a DVCS specifically designed to be used in conjunction with SVN) in the above situation to maintain my sanity and keep my own local revision history. It also helps with laptop situations. Nothing is stopping anyone from doing that today, and we don't even need to know about it. I'll admit it's not really the same thing (there's would be no single way for someone else to get at my local changes), but it meets a lot of the needs with no organizational impact on others. All this is to say, I'm sort of -0 on this -- I see as many plusses and negatives, I guess. Cheers, Mike -- Michael Droettboom Science Software Branch Operations and Engineering Division Space Telescope Science Institute Operated by AURA for NASA
John Hunter wrote: [...] > Michael, how onerous was it for you to do the merges using svn -- this > seems to be the most significant problem with svn in my reading of > David's summary. Here is a new thread related to merging, and the difference between svn and a DVCS: http://www.mail-archive.com/num...@sc.../msg05938.html Eric
Andrew Straw wrote: > Something I haven't seen addressed on the numpy list (or here) is using > hg or bzr to mirror an svn repository. What would be the added advantage > to the project of using a DVCS if all the DVCS-ophiles would simply sync > the svn tree? There has been numpy discussion of starting with a read-only mirror. My sense is that doing two-way synchronization may be possible using tailor, but it doesn't sound very practical. Without two-way synchronization, getting changes from the user's DVCS committed back to svn would be a clumsy process. It also seems that even one-way synchronization from a remote svn repository can be difficult. A little googling suggests that even making a read-only *svn* mirror of an svn repository is not necessarily as easy as one might expect. Eric
Something I haven't seen addressed on the numpy list (or here) is using hg or bzr to mirror an svn repository. What would be the added advantage to the project of using a DVCS if all the DVCS-ophiles would simply sync the svn tree? Eric Firing wrote: > John Hunter wrote: >> On Jan 7, 2008 2:37 PM, Eric Firing <ef...@ha...> wrote: > [...] >>> All this brings to mind the discussion taking place over the last week >>> on the numpy list regarding switching from svn to bzr or hg. >>> http://thread.gmane.org/gmane.comp.python.numeric.general/18130 >>> (I have been using hg locally for a couple years, and I like it.) The >>> motivation is the greater ease of branching and merging with distributed >>> VCS systems in comparison to SVN. In the numpy list discussion, it >>> sounds like all participants except Travis favor making the switch. >> I'm personally -1 on this. I prefer to keep things as simple as >> possible and do not see the need for a lot of branching, though there >> is clearly a need for some. svn is the standard version control >> system and has the best install base (now on OS X and all linux >> systems), making it easiest for users to get checkouts. If numpy, >> ipython and scipy all decide to move, I would probably be inclined to >> go along with it for consistency between these packages, but I >> wouldn't be leading the charge. I have never felt the need for a >> distributed version control system, personally, though some swear by >> it. It is probably because mpl has always just had a trunk with no >> branches, and I'd like to stick to that as much as possible, > > John, > > I understand your points, and this is not something I am going to push, > but I suspect that over the next year or two there will be a migration > of numpy, ipython, and scipy. Certainly there is no need for us to > lead, and it might be downright foolish for us to try to do so. My > sense, however, is that a good DVCS is something like python itself--the > majority of people who seriously try one get hooked. > > The point of the DVCS is not to facilitate long-term branches; it is > still normal to have a single official version. Instead, what a DVCS > does is to make version control easy to use locally, regardless of > whether one is connected to the net or not; and to use VC while > experimenting with changes. A full working repository (and a very fast > one at that) is always available. It is extremely fast and cheap to > make a clone for experimentation; if things work out, the changes can be > propagated back to the main repo, either as they were made initially or > by first generating a single clean patch; and then the experimental repo > is deleted. > > I have never used hg as a central repo in a project with more than two > developers (my helper and me), so I don't know exactly how it would be > set up, how authentication would be handled, etc. for projects like > numpy and mpl. What I do know is that using hg--and consequently having > repos for our software on all the ships we work with, and on our laptops > when we travel--has been a big help. I suspect that if you tried it, > you would find yourself liking hg for entirely private use on work for > your employer. > > Eric > >> Michael, how onerous was it for you to do the merges using svn -- this >> seems to be the most significant problem with svn in my reading of >> David's summary. >> >> JDH > > > ------------------------------------------------------------------------- > Check out the new SourceForge.net Marketplace. > It's the best place to buy or sell services for > just about anything Open Source. > http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace > _______________________________________________ > Matplotlib-devel mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
John Hunter wrote: > On Jan 7, 2008 2:37 PM, Eric Firing <ef...@ha...> wrote: [...] >> All this brings to mind the discussion taking place over the last week >> on the numpy list regarding switching from svn to bzr or hg. >> http://thread.gmane.org/gmane.comp.python.numeric.general/18130 >> (I have been using hg locally for a couple years, and I like it.) The >> motivation is the greater ease of branching and merging with distributed >> VCS systems in comparison to SVN. In the numpy list discussion, it >> sounds like all participants except Travis favor making the switch. > > I'm personally -1 on this. I prefer to keep things as simple as > possible and do not see the need for a lot of branching, though there > is clearly a need for some. svn is the standard version control > system and has the best install base (now on OS X and all linux > systems), making it easiest for users to get checkouts. If numpy, > ipython and scipy all decide to move, I would probably be inclined to > go along with it for consistency between these packages, but I > wouldn't be leading the charge. I have never felt the need for a > distributed version control system, personally, though some swear by > it. It is probably because mpl has always just had a trunk with no > branches, and I'd like to stick to that as much as possible, John, I understand your points, and this is not something I am going to push, but I suspect that over the next year or two there will be a migration of numpy, ipython, and scipy. Certainly there is no need for us to lead, and it might be downright foolish for us to try to do so. My sense, however, is that a good DVCS is something like python itself--the majority of people who seriously try one get hooked. The point of the DVCS is not to facilitate long-term branches; it is still normal to have a single official version. Instead, what a DVCS does is to make version control easy to use locally, regardless of whether one is connected to the net or not; and to use VC while experimenting with changes. A full working repository (and a very fast one at that) is always available. It is extremely fast and cheap to make a clone for experimentation; if things work out, the changes can be propagated back to the main repo, either as they were made initially or by first generating a single clean patch; and then the experimental repo is deleted. I have never used hg as a central repo in a project with more than two developers (my helper and me), so I don't know exactly how it would be set up, how authentication would be handled, etc. for projects like numpy and mpl. What I do know is that using hg--and consequently having repos for our software on all the ships we work with, and on our laptops when we travel--has been a big help. I suspect that if you tried it, you would find yourself liking hg for entirely private use on work for your employer. Eric > > Michael, how onerous was it for you to do the merges using svn -- this > seems to be the most significant problem with svn in my reading of > David's summary. > > JDH