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Yes, that seems reasonable. @elmar you seem to have a pretty good grasp of the code and the use case, would you mind taking a crack at adding those special cases? Tom On Sat, Jul 4, 2015 at 8:58 AM elmar werling <el...@ne...> wrote: > having a look at seaborns ViolinPlotter class > (https://github.com/mwaskom/seaborn/blob/master/seaborn/categorical.py), > they explicit handle the special case of "no data" and "single unique > datapoint" at line 580 ff. > > Could something similar be added to matplotlibs violinplot? > > On 04.07.2015 12:28, elmar werling wrote: > > from an end user point of view, matplotlibs violinplot should just do > > the same as seaborns violinplot. > > > > > > ##################################################################### > > import numpy as np > > import matplotlib.pyplot as plt > > import seaborn as sns > > > > N = 100 > > y1 = np.random.randn(N) + 3.0 > > y2 = np.random.randn(N) * 5.0 + 50 > > y3 = np.ones(N) * 100 # causing plt.violinplot problem > > y4 = np.arange(0) # causing plt.violinplot problem > > > > #plt.violinplot([y1, y2, y3, y4]) > > > > sns.violinplot(data=[y1, y2, y3, y4]) > > > > > > On 03.07.2015 17:52, Thomas Caswell wrote: > >> The KDE computation code is a copy of the KDE code from scipy > >> (https://github.com/scipy/scipy/blob/master/scipy/stats/kde.py), I > >> suggest raising this issue on their mailing list/github. > >> > >> I strongly suspect that violin plot should be doing data sanitation on > >> the way in or catching exceptions like this, but I am not familiar > >> enough with the math to be sure what it should do instead. > >> > >> Tom > >> > >> On Fri, Jul 3, 2015 at 11:41 AM elmar werling > >> <el...@ne... > >> <mailto:el...@ne...>> wrote: > >> > >> > >> Hi all, > >> > >> violinplot is crashing with singular matrix data. See example. > >> > >> Is this behaviour for a singular matrix intended or just a bug? > >> > >> Cheers > >> Elmar > >> > >> > >> > >> ##################################################### > >> import numpy as np > >> import matplotlib.pyplot as plt > >> > >> # data mimicing the > >> # original cumsum data (may sum up to 100) > >> N = 100 > >> y1 = np.random.randn(N) + 3.0 > >> y2 = np.random.randn(N) * 5.0 + 50 > >> y3 = np.ones(N) * 100 # data set causing violinplot problem > >> > >> plt.violinplot([y1, y2, y3]) > >> > >> plt.boxplot([y1, y2, y3]) # ok > >> plt.ylim(0,110) > >> > >> ##################################################### > >> > >> OS: Debian > >> Anaconda 2.3.0 (64-bit) > >> Python 2.7.10 > >> numpy 2.3.0 > >> matplotlib 1.4.3 > >> > >> > >> > ------------------------------------------------------------------------------ > >> Don't Limit Your Business. Reach for the Cloud. > >> GigeNET's Cloud Solutions provide you with the tools and support > that > >> you need to offload your IT needs and focus on growing your > business. > >> Configured For All Businesses. Start Your Cloud Today. > >> https://www.gigenetcloud.com/ > >> _______________________________________________ > >> Matplotlib-devel mailing list > >> Mat...@li... > >> <mailto:Mat...@li...> > >> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel > >> > >> > >> > >> > ------------------------------------------------------------------------------ > >> Don't Limit Your Business. Reach for the Cloud. > >> GigeNET's Cloud Solutions provide you with the tools and support that > >> you need to offload your IT needs and focus on growing your business. > >> Configured For All Businesses. Start Your Cloud Today. > >> https://www.gigenetcloud.com/ > >> > >> > >> > >> _______________________________________________ > >> Matplotlib-devel mailing list > >> Mat...@li... > >> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel > >> > > > > > > > ------------------------------------------------------------------------------ > > Don't Limit Your Business. Reach for the Cloud. > > GigeNET's Cloud Solutions provide you with the tools and support that > > you need to offload your IT needs and focus on growing your business. > > Configured For All Businesses. Start Your Cloud Today. > > https://www.gigenetcloud.com/ > > > > > > ------------------------------------------------------------------------------ > Don't Limit Your Business. Reach for the Cloud. > GigeNET's Cloud Solutions provide you with the tools and support that > you need to offload your IT needs and focus on growing your business. > Configured For All Businesses. Start Your Cloud Today. > https://www.gigenetcloud.com/ > _______________________________________________ > Matplotlib-devel mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-devel >
having a look at seaborns ViolinPlotter class (https://github.com/mwaskom/seaborn/blob/master/seaborn/categorical.py), they explicit handle the special case of "no data" and "single unique datapoint" at line 580 ff. Could something similar be added to matplotlibs violinplot? On 04.07.2015 12:28, elmar werling wrote: > from an end user point of view, matplotlibs violinplot should just do > the same as seaborns violinplot. > > > ##################################################################### > import numpy as np > import matplotlib.pyplot as plt > import seaborn as sns > > N = 100 > y1 = np.random.randn(N) + 3.0 > y2 = np.random.randn(N) * 5.0 + 50 > y3 = np.ones(N) * 100 # causing plt.violinplot problem > y4 = np.arange(0) # causing plt.violinplot problem > > #plt.violinplot([y1, y2, y3, y4]) > > sns.violinplot(data=[y1, y2, y3, y4]) > > > On 03.07.2015 17:52, Thomas Caswell wrote: >> The KDE computation code is a copy of the KDE code from scipy >> (https://github.com/scipy/scipy/blob/master/scipy/stats/kde.py), I >> suggest raising this issue on their mailing list/github. >> >> I strongly suspect that violin plot should be doing data sanitation on >> the way in or catching exceptions like this, but I am not familiar >> enough with the math to be sure what it should do instead. >> >> Tom >> >> On Fri, Jul 3, 2015 at 11:41 AM elmar werling >> <el...@ne... >> <mailto:el...@ne...>> wrote: >> >> >> Hi all, >> >> violinplot is crashing with singular matrix data. See example. >> >> Is this behaviour for a singular matrix intended or just a bug? >> >> Cheers >> Elmar >> >> >> >> ##################################################### >> import numpy as np >> import matplotlib.pyplot as plt >> >> # data mimicing the >> # original cumsum data (may sum up to 100) >> N = 100 >> y1 = np.random.randn(N) + 3.0 >> y2 = np.random.randn(N) * 5.0 + 50 >> y3 = np.ones(N) * 100 # data set causing violinplot problem >> >> plt.violinplot([y1, y2, y3]) >> >> plt.boxplot([y1, y2, y3]) # ok >> plt.ylim(0,110) >> >> ##################################################### >> >> OS: Debian >> Anaconda 2.3.0 (64-bit) >> Python 2.7.10 >> numpy 2.3.0 >> matplotlib 1.4.3 >> >> >> ------------------------------------------------------------------------------ >> Don't Limit Your Business. Reach for the Cloud. >> GigeNET's Cloud Solutions provide you with the tools and support that >> you need to offload your IT needs and focus on growing your business. >> Configured For All Businesses. Start Your Cloud Today. >> https://www.gigenetcloud.com/ >> _______________________________________________ >> Matplotlib-devel mailing list >> Mat...@li... >> <mailto:Mat...@li...> >> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel >> >> >> >> ------------------------------------------------------------------------------ >> Don't Limit Your Business. Reach for the Cloud. >> GigeNET's Cloud Solutions provide you with the tools and support that >> you need to offload your IT needs and focus on growing your business. >> Configured For All Businesses. Start Your Cloud Today. >> https://www.gigenetcloud.com/ >> >> >> >> _______________________________________________ >> Matplotlib-devel mailing list >> Mat...@li... >> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel >> > > > ------------------------------------------------------------------------------ > Don't Limit Your Business. Reach for the Cloud. > GigeNET's Cloud Solutions provide you with the tools and support that > you need to offload your IT needs and focus on growing your business. > Configured For All Businesses. Start Your Cloud Today. > https://www.gigenetcloud.com/ >
from an end user point of view, matplotlibs violinplot should just do the same as seaborns violinplot. ##################################################################### import numpy as np import matplotlib.pyplot as plt import seaborn as sns N = 100 y1 = np.random.randn(N) + 3.0 y2 = np.random.randn(N) * 5.0 + 50 y3 = np.ones(N) * 100 # causing plt.violinplot problem y4 = np.arange(0) # causing plt.violinplot problem #plt.violinplot([y1, y2, y3, y4]) sns.violinplot(data=[y1, y2, y3, y4]) On 03.07.2015 17:52, Thomas Caswell wrote: > The KDE computation code is a copy of the KDE code from scipy > (https://github.com/scipy/scipy/blob/master/scipy/stats/kde.py), I > suggest raising this issue on their mailing list/github. > > I strongly suspect that violin plot should be doing data sanitation on > the way in or catching exceptions like this, but I am not familiar > enough with the math to be sure what it should do instead. > > Tom > > On Fri, Jul 3, 2015 at 11:41 AM elmar werling > <el...@ne... > <mailto:el...@ne...>> wrote: > > > Hi all, > > violinplot is crashing with singular matrix data. See example. > > Is this behaviour for a singular matrix intended or just a bug? > > Cheers > Elmar > > > > ##################################################### > import numpy as np > import matplotlib.pyplot as plt > > # data mimicing the > # original cumsum data (may sum up to 100) > N = 100 > y1 = np.random.randn(N) + 3.0 > y2 = np.random.randn(N) * 5.0 + 50 > y3 = np.ones(N) * 100 # data set causing violinplot problem > > plt.violinplot([y1, y2, y3]) > > plt.boxplot([y1, y2, y3]) # ok > plt.ylim(0,110) > > ##################################################### > > OS: Debian > Anaconda 2.3.0 (64-bit) > Python 2.7.10 > numpy 2.3.0 > matplotlib 1.4.3 > > > ------------------------------------------------------------------------------ > Don't Limit Your Business. Reach for the Cloud. > GigeNET's Cloud Solutions provide you with the tools and support that > you need to offload your IT needs and focus on growing your business. > Configured For All Businesses. Start Your Cloud Today. > https://www.gigenetcloud.com/ > _______________________________________________ > Matplotlib-devel mailing list > Mat...@li... > <mailto:Mat...@li...> > https://lists.sourceforge.net/lists/listinfo/matplotlib-devel > > > > ------------------------------------------------------------------------------ > Don't Limit Your Business. Reach for the Cloud. > GigeNET's Cloud Solutions provide you with the tools and support that > you need to offload your IT needs and focus on growing your business. > Configured For All Businesses. Start Your Cloud Today. > https://www.gigenetcloud.com/ > > > > _______________________________________________ > Matplotlib-devel mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-devel >