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Showing 3 results of 3

From: Thomas C. <tca...@gm...> - 2015年07月04日 13:23:42
Yes, that seems reasonable. @elmar you seem to have a pretty good grasp of
the code and the use case, would you mind taking a crack at adding those
special cases?
Tom
On Sat, Jul 4, 2015 at 8:58 AM elmar werling <el...@ne...> wrote:
> having a look at seaborns ViolinPlotter class
> (https://github.com/mwaskom/seaborn/blob/master/seaborn/categorical.py),
> they explicit handle the special case of "no data" and "single unique
> datapoint" at line 580 ff.
>
> Could something similar be added to matplotlibs violinplot?
>
> On 04.07.2015 12:28, elmar werling wrote:
> > from an end user point of view, matplotlibs violinplot should just do
> > the same as seaborns violinplot.
> >
> >
> > #####################################################################
> > import numpy as np
> > import matplotlib.pyplot as plt
> > import seaborn as sns
> >
> > N = 100
> > y1 = np.random.randn(N) + 3.0
> > y2 = np.random.randn(N) * 5.0 + 50
> > y3 = np.ones(N) * 100 # causing plt.violinplot problem
> > y4 = np.arange(0) # causing plt.violinplot problem
> >
> > #plt.violinplot([y1, y2, y3, y4])
> >
> > sns.violinplot(data=[y1, y2, y3, y4])
> >
> >
> > On 03.07.2015 17:52, Thomas Caswell wrote:
> >> The KDE computation code is a copy of the KDE code from scipy
> >> (https://github.com/scipy/scipy/blob/master/scipy/stats/kde.py), I
> >> suggest raising this issue on their mailing list/github.
> >>
> >> I strongly suspect that violin plot should be doing data sanitation on
> >> the way in or catching exceptions like this, but I am not familiar
> >> enough with the math to be sure what it should do instead.
> >>
> >> Tom
> >>
> >> On Fri, Jul 3, 2015 at 11:41 AM elmar werling
> >> <el...@ne...
> >> <mailto:el...@ne...>> wrote:
> >>
> >>
> >> Hi all,
> >>
> >> violinplot is crashing with singular matrix data. See example.
> >>
> >> Is this behaviour for a singular matrix intended or just a bug?
> >>
> >> Cheers
> >> Elmar
> >>
> >>
> >>
> >> #####################################################
> >> import numpy as np
> >> import matplotlib.pyplot as plt
> >>
> >> # data mimicing the
> >> # original cumsum data (may sum up to 100)
> >> N = 100
> >> y1 = np.random.randn(N) + 3.0
> >> y2 = np.random.randn(N) * 5.0 + 50
> >> y3 = np.ones(N) * 100 # data set causing violinplot problem
> >>
> >> plt.violinplot([y1, y2, y3])
> >>
> >> plt.boxplot([y1, y2, y3]) # ok
> >> plt.ylim(0,110)
> >>
> >> #####################################################
> >>
> >> OS: Debian
> >> Anaconda 2.3.0 (64-bit)
> >> Python 2.7.10
> >> numpy 2.3.0
> >> matplotlib 1.4.3
> >>
> >>
> >>
> ------------------------------------------------------------------------------
> >> Don't Limit Your Business. Reach for the Cloud.
> >> GigeNET's Cloud Solutions provide you with the tools and support
> that
> >> you need to offload your IT needs and focus on growing your
> business.
> >> Configured For All Businesses. Start Your Cloud Today.
> >> https://www.gigenetcloud.com/
> >> _______________________________________________
> >> Matplotlib-devel mailing list
> >> Mat...@li...
> >> <mailto:Mat...@li...>
> >> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
> >>
> >>
> >>
> >>
> ------------------------------------------------------------------------------
> >> Don't Limit Your Business. Reach for the Cloud.
> >> GigeNET's Cloud Solutions provide you with the tools and support that
> >> you need to offload your IT needs and focus on growing your business.
> >> Configured For All Businesses. Start Your Cloud Today.
> >> https://www.gigenetcloud.com/
> >>
> >>
> >>
> >> _______________________________________________
> >> Matplotlib-devel mailing list
> >> Mat...@li...
> >> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
> >>
> >
> >
> >
> ------------------------------------------------------------------------------
> > Don't Limit Your Business. Reach for the Cloud.
> > GigeNET's Cloud Solutions provide you with the tools and support that
> > you need to offload your IT needs and focus on growing your business.
> > Configured For All Businesses. Start Your Cloud Today.
> > https://www.gigenetcloud.com/
> >
>
>
>
> ------------------------------------------------------------------------------
> Don't Limit Your Business. Reach for the Cloud.
> GigeNET's Cloud Solutions provide you with the tools and support that
> you need to offload your IT needs and focus on growing your business.
> Configured For All Businesses. Start Your Cloud Today.
> https://www.gigenetcloud.com/
> _______________________________________________
> Matplotlib-devel mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
>
From: elmar w. <el...@ne...> - 2015年07月04日 12:58:08
having a look at seaborns ViolinPlotter class 
(https://github.com/mwaskom/seaborn/blob/master/seaborn/categorical.py), 
they explicit handle the special case of "no data" and "single unique 
datapoint" at line 580 ff.
Could something similar be added to matplotlibs violinplot?
On 04.07.2015 12:28, elmar werling wrote:
> from an end user point of view, matplotlibs violinplot should just do
> the same as seaborns violinplot.
>
>
> #####################################################################
> import numpy as np
> import matplotlib.pyplot as plt
> import seaborn as sns
>
> N = 100
> y1 = np.random.randn(N) + 3.0
> y2 = np.random.randn(N) * 5.0 + 50
> y3 = np.ones(N) * 100 # causing plt.violinplot problem
> y4 = np.arange(0) # causing plt.violinplot problem
>
> #plt.violinplot([y1, y2, y3, y4])
>
> sns.violinplot(data=[y1, y2, y3, y4])
>
>
> On 03.07.2015 17:52, Thomas Caswell wrote:
>> The KDE computation code is a copy of the KDE code from scipy
>> (https://github.com/scipy/scipy/blob/master/scipy/stats/kde.py), I
>> suggest raising this issue on their mailing list/github.
>>
>> I strongly suspect that violin plot should be doing data sanitation on
>> the way in or catching exceptions like this, but I am not familiar
>> enough with the math to be sure what it should do instead.
>>
>> Tom
>>
>> On Fri, Jul 3, 2015 at 11:41 AM elmar werling
>> <el...@ne...
>> <mailto:el...@ne...>> wrote:
>>
>>
>> Hi all,
>>
>> violinplot is crashing with singular matrix data. See example.
>>
>> Is this behaviour for a singular matrix intended or just a bug?
>>
>> Cheers
>> Elmar
>>
>>
>>
>> #####################################################
>> import numpy as np
>> import matplotlib.pyplot as plt
>>
>> # data mimicing the
>> # original cumsum data (may sum up to 100)
>> N = 100
>> y1 = np.random.randn(N) + 3.0
>> y2 = np.random.randn(N) * 5.0 + 50
>> y3 = np.ones(N) * 100 # data set causing violinplot problem
>>
>> plt.violinplot([y1, y2, y3])
>>
>> plt.boxplot([y1, y2, y3]) # ok
>> plt.ylim(0,110)
>>
>> #####################################################
>>
>> OS: Debian
>> Anaconda 2.3.0 (64-bit)
>> Python 2.7.10
>> numpy 2.3.0
>> matplotlib 1.4.3
>>
>>
>> ------------------------------------------------------------------------------
>> Don't Limit Your Business. Reach for the Cloud.
>> GigeNET's Cloud Solutions provide you with the tools and support that
>> you need to offload your IT needs and focus on growing your business.
>> Configured For All Businesses. Start Your Cloud Today.
>> https://www.gigenetcloud.com/
>> _______________________________________________
>> Matplotlib-devel mailing list
>> Mat...@li...
>> <mailto:Mat...@li...>
>> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Don't Limit Your Business. Reach for the Cloud.
>> GigeNET's Cloud Solutions provide you with the tools and support that
>> you need to offload your IT needs and focus on growing your business.
>> Configured For All Businesses. Start Your Cloud Today.
>> https://www.gigenetcloud.com/
>>
>>
>>
>> _______________________________________________
>> Matplotlib-devel mailing list
>> Mat...@li...
>> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
>>
>
>
> ------------------------------------------------------------------------------
> Don't Limit Your Business. Reach for the Cloud.
> GigeNET's Cloud Solutions provide you with the tools and support that
> you need to offload your IT needs and focus on growing your business.
> Configured For All Businesses. Start Your Cloud Today.
> https://www.gigenetcloud.com/
>
From: elmar w. <el...@ne...> - 2015年07月04日 10:29:08
from an end user point of view, matplotlibs violinplot should just do 
the same as seaborns violinplot.
#####################################################################
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
N = 100
y1 = np.random.randn(N) + 3.0
y2 = np.random.randn(N) * 5.0 + 50
y3 = np.ones(N) * 100 # causing plt.violinplot problem
y4 = np.arange(0) # causing plt.violinplot problem
#plt.violinplot([y1, y2, y3, y4])
sns.violinplot(data=[y1, y2, y3, y4])
On 03.07.2015 17:52, Thomas Caswell wrote:
> The KDE computation code is a copy of the KDE code from scipy
> (https://github.com/scipy/scipy/blob/master/scipy/stats/kde.py), I
> suggest raising this issue on their mailing list/github.
>
> I strongly suspect that violin plot should be doing data sanitation on
> the way in or catching exceptions like this, but I am not familiar
> enough with the math to be sure what it should do instead.
>
> Tom
>
> On Fri, Jul 3, 2015 at 11:41 AM elmar werling
> <el...@ne...
> <mailto:el...@ne...>> wrote:
>
>
> Hi all,
>
> violinplot is crashing with singular matrix data. See example.
>
> Is this behaviour for a singular matrix intended or just a bug?
>
> Cheers
> Elmar
>
>
>
> #####################################################
> import numpy as np
> import matplotlib.pyplot as plt
>
> # data mimicing the
> # original cumsum data (may sum up to 100)
> N = 100
> y1 = np.random.randn(N) + 3.0
> y2 = np.random.randn(N) * 5.0 + 50
> y3 = np.ones(N) * 100 # data set causing violinplot problem
>
> plt.violinplot([y1, y2, y3])
>
> plt.boxplot([y1, y2, y3]) # ok
> plt.ylim(0,110)
>
> #####################################################
>
> OS: Debian
> Anaconda 2.3.0 (64-bit)
> Python 2.7.10
> numpy 2.3.0
> matplotlib 1.4.3
>
>
> ------------------------------------------------------------------------------
> Don't Limit Your Business. Reach for the Cloud.
> GigeNET's Cloud Solutions provide you with the tools and support that
> you need to offload your IT needs and focus on growing your business.
> Configured For All Businesses. Start Your Cloud Today.
> https://www.gigenetcloud.com/
> _______________________________________________
> Matplotlib-devel mailing list
> Mat...@li...
> <mailto:Mat...@li...>
> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
>
>
>
> ------------------------------------------------------------------------------
> Don't Limit Your Business. Reach for the Cloud.
> GigeNET's Cloud Solutions provide you with the tools and support that
> you need to offload your IT needs and focus on growing your business.
> Configured For All Businesses. Start Your Cloud Today.
> https://www.gigenetcloud.com/
>
>
>
> _______________________________________________
> Matplotlib-devel mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-devel
>

Showing 3 results of 3

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