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Revision: 7024 http://matplotlib.svn.sourceforge.net/matplotlib/?rev=7024&view=rev Author: efiring Date: 2009年04月05日 01:37:26 +0000 (2009年4月05日) Log Message: ----------- Fix PatchCollection bug 2723527; thanks to Thomas Robitaille Modified Paths: -------------- branches/v0_98_5_maint/lib/matplotlib/collections.py Modified: branches/v0_98_5_maint/lib/matplotlib/collections.py =================================================================== --- branches/v0_98_5_maint/lib/matplotlib/collections.py 2009年04月04日 22:52:53 UTC (rev 7023) +++ branches/v0_98_5_maint/lib/matplotlib/collections.py 2009年04月05日 01:37:26 UTC (rev 7024) @@ -1108,7 +1108,7 @@ facecolors = [determine_facecolor(p) for p in patches] edgecolors = [p.get_edgecolor() for p in patches] - linewidths = [p.get_linewidths() for p in patches] + linewidths = [p.get_linewidth() for p in patches] antialiaseds = [p.get_antialiased() for p in patches] Collection.__init__( This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
Revision: 7025 http://matplotlib.svn.sourceforge.net/matplotlib/?rev=7025&view=rev Author: efiring Date: 2009年04月05日 02:16:44 +0000 (2009年4月05日) Log Message: ----------- Fix PatchCollection bug 2732455 by letting to_rgba handle 'none' Modified Paths: -------------- branches/v0_98_5_maint/lib/matplotlib/colors.py Modified: branches/v0_98_5_maint/lib/matplotlib/colors.py =================================================================== --- branches/v0_98_5_maint/lib/matplotlib/colors.py 2009年04月05日 01:37:26 UTC (rev 7024) +++ branches/v0_98_5_maint/lib/matplotlib/colors.py 2009年04月05日 02:16:44 UTC (rev 7025) @@ -318,10 +318,18 @@ Returns an *RGBA* tuple of four floats from 0-1. For acceptable values of *arg*, see :meth:`to_rgb`. + In addition, if *arg* is "none" (case-insensitive), + then (0,0,0,0) will be returned. If *arg* is an *RGBA* sequence and *alpha* is not *None*, *alpha* will replace the original *A*. """ try: + if arg.lower() == 'none': + return (0.0, 0.0, 0.0, 0.0) + except AttributeError: + pass + + try: if not cbook.is_string_like(arg) and cbook.iterable(arg): if len(arg) == 4: if [x for x in arg if (float(x) < 0) or (x > 1)]: This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
Revision: 7023 http://matplotlib.svn.sourceforge.net/matplotlib/?rev=7023&view=rev Author: efiring Date: 2009年04月04日 22:52:53 +0000 (2009年4月04日) Log Message: ----------- Add log scale option to clip non-positive values instead of masking Modified Paths: -------------- trunk/matplotlib/CHANGELOG trunk/matplotlib/doc/api/api_changes.rst trunk/matplotlib/examples/pylab_examples/log_demo.py trunk/matplotlib/lib/matplotlib/axes.py trunk/matplotlib/lib/matplotlib/scale.py Modified: trunk/matplotlib/CHANGELOG =================================================================== --- trunk/matplotlib/CHANGELOG 2009年04月01日 20:44:58 UTC (rev 7022) +++ trunk/matplotlib/CHANGELOG 2009年04月04日 22:52:53 UTC (rev 7023) @@ -1,3 +1,6 @@ +2009年04月04日 Allow log axis scale to clip non-positive values to + small positive value; this is useful for errorbars. - EF + 2009年03月28日 Make images handle nan in their array argument. A helper, cbook.safe_masked_invalid() was added. - EF Modified: trunk/matplotlib/doc/api/api_changes.rst =================================================================== --- trunk/matplotlib/doc/api/api_changes.rst 2009年04月01日 20:44:58 UTC (rev 7022) +++ trunk/matplotlib/doc/api/api_changes.rst 2009年04月04日 22:52:53 UTC (rev 7023) @@ -19,6 +19,12 @@ Changes for 0.98.x ================== +* Added new keyword parameters *nonposx*, *nonposy* to + :class:`matplotlib.axes.Axes` methods that set log scale + parameters. The default is still to mask out non-positive + values, but the kwargs accept 'clip', which causes non-positive + values to be replaced with a very small positive value. + * Added new :func:`matplotlib.pyplot.fignum_exists` and :func:`matplotlib.pyplot.get_fignums`; they merely expose information that had been hidden in :mod:`matplotlib._pylab_helpers`. Modified: trunk/matplotlib/examples/pylab_examples/log_demo.py =================================================================== --- trunk/matplotlib/examples/pylab_examples/log_demo.py 2009年04月01日 20:44:58 UTC (rev 7022) +++ trunk/matplotlib/examples/pylab_examples/log_demo.py 2009年04月04日 22:52:53 UTC (rev 7023) @@ -6,21 +6,33 @@ t = np.arange(0.01, 20.0, 0.01) # log y axis -plt.subplot(311) +plt.subplot(221) plt.semilogy(t, np.exp(-t/5.0)) -plt.ylabel('semilogy') +plt.title('semilogy') plt.grid(True) # log x axis -plt.subplot(312) +plt.subplot(222) plt.semilogx(t, np.sin(2*np.pi*t)) -plt.ylabel('semilogx') +plt.title('semilogx') plt.grid(True) # log x and y axis -plt.subplot(313) +plt.subplot(223) plt.loglog(t, 20*np.exp(-t/10.0), basex=4) plt.grid(True) -plt.ylabel('loglog base 4 on x') +plt.title('loglog base 4 on x') +# with errorbars: clip non-positive values +ax = plt.subplot(224) +ax.set_xscale("log", nonposx='clip') +ax.set_yscale("log", nonposy='clip') + +x = 10.0**np.linspace(0.0, 2.0, 20) +y = x**2.0 +plt.errorbar(x, y, xerr=0.1*x, yerr=5.0+0.75*y) +ax.set_ylim(ymin=0.1) +ax.set_title('Errorbars go negative') + + plt.show() Modified: trunk/matplotlib/lib/matplotlib/axes.py =================================================================== --- trunk/matplotlib/lib/matplotlib/axes.py 2009年04月01日 20:44:58 UTC (rev 7022) +++ trunk/matplotlib/lib/matplotlib/axes.py 2009年04月04日 22:52:53 UTC (rev 7023) @@ -3455,6 +3455,10 @@ plot; see :meth:`matplotlib.axes.Axes.set_xscale` / :meth:`matplotlib.axes.Axes.set_yscale` for details + *nonposx*/*nonposy*: ['mask' | 'clip' ] + non-positive values in *x* or *y* can be masked as + invalid, or clipped to a very small positive number + The remaining valid kwargs are :class:`~matplotlib.lines.Line2D` properties: @@ -3469,9 +3473,11 @@ dx = {'basex': kwargs.pop('basex', 10), 'subsx': kwargs.pop('subsx', None), + 'nonposx': kwargs.pop('nonposx', 'mask'), } dy = {'basey': kwargs.pop('basey', 10), 'subsy': kwargs.pop('subsy', None), + 'nonposy': kwargs.pop('nonposy', 'mask'), } self.set_xscale('log', **dx) @@ -3508,6 +3514,10 @@ plot; see :meth:`~matplotlib.axes.Axes.set_xscale` for details. + *nonposx*: ['mask' | 'clip' ] + non-positive values in *x* can be masked as + invalid, or clipped to a very small positive number + The remaining valid kwargs are :class:`~matplotlib.lines.Line2D` properties: @@ -3521,6 +3531,7 @@ if not self._hold: self.cla() d = {'basex': kwargs.pop( 'basex', 10), 'subsx': kwargs.pop( 'subsx', None), + 'nonposx': kwargs.pop('nonposx', 'mask'), } self.set_xscale('log', **d) @@ -3554,6 +3565,10 @@ plot; see :meth:`~matplotlib.axes.Axes.set_yscale` for details. + *nonposy*: ['mask' | 'clip' ] + non-positive values in *y* can be masked as + invalid, or clipped to a very small positive number + The remaining valid kwargs are :class:`~matplotlib.lines.Line2D` properties: @@ -3567,6 +3582,7 @@ if not self._hold: self.cla() d = {'basey': kwargs.pop('basey', 10), 'subsy': kwargs.pop('subsy', None), + 'nonposy': kwargs.pop('nonposy', 'mask'), } self.set_yscale('log', **d) b = self._hold Modified: trunk/matplotlib/lib/matplotlib/scale.py =================================================================== --- trunk/matplotlib/lib/matplotlib/scale.py 2009年04月01日 20:44:58 UTC (rev 7022) +++ trunk/matplotlib/lib/matplotlib/scale.py 2009年04月04日 22:52:53 UTC (rev 7023) @@ -87,6 +87,10 @@ return ma.MaskedArray(a, mask=mask) return a +def _clip_non_positives(a): + a[a <= 0.0] = 1e-300 + return a + class LogScale(ScaleBase): """ A standard logarithmic scale. Care is taken so non-positive @@ -104,14 +108,24 @@ name = 'log' - class Log10Transform(Transform): + class LogTransformBase(Transform): input_dims = 1 output_dims = 1 is_separable = True + + def __init__(self, nonpos): + Transform.__init__(self) + if nonpos == 'mask': + self._handle_nonpos = _mask_non_positives + else: + self._handle_nonpos = _clip_non_positives + + + class Log10Transform(LogTransformBase): base = 10.0 def transform(self, a): - a = _mask_non_positives(a * 10.0) + a = self._handle_nonpos(a * 10.0) if isinstance(a, MaskedArray): return ma.log10(a) return np.log10(a) @@ -131,14 +145,11 @@ def inverted(self): return LogScale.Log10Transform() - class Log2Transform(Transform): - input_dims = 1 - output_dims = 1 - is_separable = True + class Log2Transform(LogTransformBase): base = 2.0 def transform(self, a): - a = _mask_non_positives(a * 2.0) + a = self._handle_nonpos(a * 2.0) if isinstance(a, MaskedArray): return ma.log(a) / np.log(2) return np.log2(a) @@ -158,14 +169,11 @@ def inverted(self): return LogScale.Log2Transform() - class NaturalLogTransform(Transform): - input_dims = 1 - output_dims = 1 - is_separable = True + class NaturalLogTransform(LogTransformBase): base = np.e def transform(self, a): - a = _mask_non_positives(a * np.e) + a = self._handle_nonpos(a * np.e) if isinstance(a, MaskedArray): return ma.log(a) return np.log(a) @@ -190,12 +198,16 @@ output_dims = 1 is_separable = True - def __init__(self, base): + def __init__(self, base, nonpos): Transform.__init__(self) self.base = base + if nonpos == 'mask': + self._handle_nonpos = _mask_non_positives + else: + self._handle_nonpos = _clip_non_positives def transform(self, a): - a = _mask_non_positives(a * self.base) + a = self._handle_nonpos(a * self.base) if isinstance(a, MaskedArray): return ma.log(a) / np.log(self.base) return np.log(a) / np.log(self.base) @@ -224,6 +236,10 @@ *basex*/*basey*: The base of the logarithm + *nonposx*/*nonposy*: ['mask' | 'clip' ] + non-positive values in *x* or *y* can be masked as + invalid, or clipped to a very small positive number + *subsx*/*subsy*: Where to place the subticks between each major tick. Should be a sequence of integers. For example, in a log10 @@ -235,18 +251,23 @@ if axis.axis_name == 'x': base = kwargs.pop('basex', 10.0) subs = kwargs.pop('subsx', None) + nonpos = kwargs.pop('nonposx', 'mask') else: base = kwargs.pop('basey', 10.0) subs = kwargs.pop('subsy', None) + nonpos = kwargs.pop('nonposy', 'mask') + if nonpos not in ['mask', 'clip']: + raise ValueError("nonposx, nonposy kwarg must be 'mask' or 'clip'") + if base == 10.0: - self._transform = self.Log10Transform() + self._transform = self.Log10Transform(nonpos) elif base == 2.0: - self._transform = self.Log2Transform() + self._transform = self.Log2Transform(nonpos) elif base == np.e: - self._transform = self.NaturalLogTransform() + self._transform = self.NaturalLogTransform(nonpos) else: - self._transform = self.LogTransform(base) + self._transform = self.LogTransform(base, nonpos) self.base = base self.subs = subs This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
Revision: 7022 http://matplotlib.svn.sourceforge.net/matplotlib/?rev=7022&view=rev Author: jdh2358 Date: 2009年04月01日 20:44:58 +0000 (2009年4月01日) Log Message: ----------- added compound path demo Added Paths: ----------- trunk/matplotlib/examples/api/compound_path.py Removed Paths: ------------- trunk/matplotlib/examples/api/complex_path.py Deleted: trunk/matplotlib/examples/api/complex_path.py =================================================================== --- trunk/matplotlib/examples/api/complex_path.py 2009年04月01日 20:44:27 UTC (rev 7021) +++ trunk/matplotlib/examples/api/complex_path.py 2009年04月01日 20:44:58 UTC (rev 7022) @@ -1,35 +0,0 @@ -""" -Make a compund path -- in this case two simple polygons, a rectangle -and a triangle. Use CLOSEOPOLY and MOVETO for the different parts of -the compound path -""" -import numpy as np -from matplotlib.path import Path -from matplotlib.patches import PathPatch -import matplotlib.pyplot as plt - - -vertices = [] -codes = [] - -codes = [Path.MOVETO] + [Path.LINETO]*3 + [Path.CLOSEPOLY] -vertices = [(1,1), (1,2), (2, 2), (2, 1), (0,0)] - -codes += [Path.MOVETO] + [Path.LINETO]*2 + [Path.CLOSEPOLY] -vertices += [(4,4), (5,5), (5, 4), (0,0)] - -vertices = np.array(vertices, float) -path = Path(vertices, codes) - -pathpatch = PathPatch(path, facecolor='red', edgecolor='green') - -fig = plt.figure() -ax = fig.add_subplot(111) -ax.add_patch(pathpatch) -ax.set_title('A compound path') - -ax.dataLim.update_from_data_xy(vertices) -ax.autoscale_view() - - -plt.show() Copied: trunk/matplotlib/examples/api/compound_path.py (from rev 7021, trunk/matplotlib/examples/api/complex_path.py) =================================================================== --- trunk/matplotlib/examples/api/compound_path.py (rev 0) +++ trunk/matplotlib/examples/api/compound_path.py 2009年04月01日 20:44:58 UTC (rev 7022) @@ -0,0 +1,35 @@ +""" +Make a compund path -- in this case two simple polygons, a rectangle +and a triangle. Use CLOSEOPOLY and MOVETO for the different parts of +the compound path +""" +import numpy as np +from matplotlib.path import Path +from matplotlib.patches import PathPatch +import matplotlib.pyplot as plt + + +vertices = [] +codes = [] + +codes = [Path.MOVETO] + [Path.LINETO]*3 + [Path.CLOSEPOLY] +vertices = [(1,1), (1,2), (2, 2), (2, 1), (0,0)] + +codes += [Path.MOVETO] + [Path.LINETO]*2 + [Path.CLOSEPOLY] +vertices += [(4,4), (5,5), (5, 4), (0,0)] + +vertices = np.array(vertices, float) +path = Path(vertices, codes) + +pathpatch = PathPatch(path, facecolor='red', edgecolor='green') + +fig = plt.figure() +ax = fig.add_subplot(111) +ax.add_patch(pathpatch) +ax.set_title('A compound path') + +ax.dataLim.update_from_data_xy(vertices) +ax.autoscale_view() + + +plt.show() This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
Revision: 7021 http://matplotlib.svn.sourceforge.net/matplotlib/?rev=7021&view=rev Author: jdh2358 Date: 2009年04月01日 20:44:27 +0000 (2009年4月01日) Log Message: ----------- added compound path demo Added Paths: ----------- trunk/matplotlib/examples/api/complex_path.py Added: trunk/matplotlib/examples/api/complex_path.py =================================================================== --- trunk/matplotlib/examples/api/complex_path.py (rev 0) +++ trunk/matplotlib/examples/api/complex_path.py 2009年04月01日 20:44:27 UTC (rev 7021) @@ -0,0 +1,35 @@ +""" +Make a compund path -- in this case two simple polygons, a rectangle +and a triangle. Use CLOSEOPOLY and MOVETO for the different parts of +the compound path +""" +import numpy as np +from matplotlib.path import Path +from matplotlib.patches import PathPatch +import matplotlib.pyplot as plt + + +vertices = [] +codes = [] + +codes = [Path.MOVETO] + [Path.LINETO]*3 + [Path.CLOSEPOLY] +vertices = [(1,1), (1,2), (2, 2), (2, 1), (0,0)] + +codes += [Path.MOVETO] + [Path.LINETO]*2 + [Path.CLOSEPOLY] +vertices += [(4,4), (5,5), (5, 4), (0,0)] + +vertices = np.array(vertices, float) +path = Path(vertices, codes) + +pathpatch = PathPatch(path, facecolor='red', edgecolor='green') + +fig = plt.figure() +ax = fig.add_subplot(111) +ax.add_patch(pathpatch) +ax.set_title('A compound path') + +ax.dataLim.update_from_data_xy(vertices) +ax.autoscale_view() + + +plt.show() This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
Revision: 7020 http://matplotlib.svn.sourceforge.net/matplotlib/?rev=7020&view=rev Author: jrevans Date: 2009年04月01日 17:28:11 +0000 (2009年4月01日) Log Message: ----------- Updated 'fill' to handle unitized data. Added a unit-test for it. Modified Paths: -------------- trunk/matplotlib/lib/matplotlib/axes.py trunk/matplotlib/test/mplTest/units/__init__.py Added Paths: ----------- trunk/matplotlib/test/test_plots/TestFill.py trunk/matplotlib/test/test_plots/baseline/TestFill/ trunk/matplotlib/test/test_plots/baseline/TestFill/fill_units.png Modified: trunk/matplotlib/lib/matplotlib/axes.py =================================================================== --- trunk/matplotlib/lib/matplotlib/axes.py 2009年03月31日 17:59:53 UTC (rev 7019) +++ trunk/matplotlib/lib/matplotlib/axes.py 2009年04月01日 17:28:11 UTC (rev 7020) @@ -216,9 +216,10 @@ if self.axes.xaxis is not None and self.axes.yaxis is not None: bx = self.axes.xaxis.update_units(x) by = self.axes.yaxis.update_units(y) - # right now multicol is not supported if either x or y are - # unit enabled but this can be fixed.. - if bx or by: return x, y, False + if bx: + x = self.axes.convert_xunits(x) + if by: + y = self.axes.convert_yunits(y) x = ma.asarray(x) y = ma.asarray(y) @@ -310,8 +311,6 @@ ret.append(seg) def makefill(x, y): - x = self.axes.convert_xunits(x) - y = self.axes.convert_yunits(y) facecolor = self._get_next_cycle_color() seg = mpatches.Polygon(np.hstack( (x[:,np.newaxis],y[:,np.newaxis])), @@ -358,8 +357,6 @@ def makefill(x, y): facecolor = color - x = self.axes.convert_xunits(x) - y = self.axes.convert_yunits(y) seg = mpatches.Polygon(np.hstack( (x[:,np.newaxis],y[:,np.newaxis])), facecolor = facecolor, Modified: trunk/matplotlib/test/mplTest/units/__init__.py =================================================================== --- trunk/matplotlib/test/mplTest/units/__init__.py 2009年03月31日 17:59:53 UTC (rev 7019) +++ trunk/matplotlib/test/mplTest/units/__init__.py 2009年04月01日 17:28:11 UTC (rev 7020) @@ -71,6 +71,7 @@ # Angles deg = UnitDbl( 1.0, "deg" ) +rad = UnitDbl( 1.0, "rad" ) # Time sec = UnitDbl( 1.0, "sec" ) Added: trunk/matplotlib/test/test_plots/TestFill.py =================================================================== --- trunk/matplotlib/test/test_plots/TestFill.py (rev 0) +++ trunk/matplotlib/test/test_plots/TestFill.py 2009年04月01日 17:28:11 UTC (rev 7020) @@ -0,0 +1,87 @@ +#======================================================================= +"""The Fill unit-test class implementation.""" +#======================================================================= + +from mplTest import * + +#======================================================================= +# Add import modules below. +import matplotlib +matplotlib.use( "Agg", warn = False ) + +import pylab +import numpy as npy +from datetime import datetime +# +#======================================================================= + +#======================================================================= +class TestFill( MplTestCase ): + """Test the various axes fill methods.""" + + # Uncomment any appropriate tags + tags = [ + # 'gui', # requires the creation of a gui window + 'agg', # uses agg in the backend + 'agg-only', # uses only agg in the backend + # 'wx', # uses wx in the backend + # 'qt', # uses qt in the backend + # 'ps', # uses the postscript backend + # 'units', # uses units in the test + 'PIL', # uses PIL for image comparison + ] + + #-------------------------------------------------------------------- + def setUp( self ): + """Setup any data needed for the unit test.""" + units.register() + + #-------------------------------------------------------------------- + def tearDown( self ): + """Clean-up any generated files here.""" + pass + + #-------------------------------------------------------------------- + def test_fill_units( self ): + """Test the fill method with unitized-data.""" + + fname = self.outFile( "fill_units.png" ) + + # generate some data + t = units.Epoch( "ET", dt=datetime(2009, 4, 27) ) + value = 10.0 * units.deg + day = units.Duration( "ET", 24.0 * 60.0 * 60.0 ) + + fig = pylab.figure() + + # Top-Left + ax1 = fig.add_subplot( 221 ) + ax1.plot( [t], [value], yunits='deg', color='red' ) + ax1.fill( [733525.0, 733525.0, 733526.0, 733526.0], + [0.0, 0.0, 90.0, 0.0], 'b' ) + + # Top-Right + ax2 = fig.add_subplot( 222 ) + ax2.plot( [t], [value], yunits='deg', color='red' ) + ax2.fill( [t, t, t+day, t+day], + [0.0, 0.0, 90.0, 0.0], 'b' ) + + # Bottom-Left + ax3 = fig.add_subplot( 223 ) + ax3.plot( [t], [value], yunits='deg', color='red' ) + ax1.fill( [733525.0, 733525.0, 733526.0, 733526.0], + [0*units.deg, 0*units.deg, 90*units.deg, 0*units.deg], 'b' ) + + # Bottom-Right + ax4 = fig.add_subplot( 224 ) + ax4.plot( [t], [value], yunits='deg', color='red' ) + ax4.fill( [t, t, t+day, t+day], + [0*units.deg, 0*units.deg, 90*units.deg, 0*units.deg], + facecolor="blue" ) + + fig.autofmt_xdate() + fig.savefig( fname ) + self.checkImage( fname ) + + #-------------------------------------------------------------------- + Added: trunk/matplotlib/test/test_plots/baseline/TestFill/fill_units.png =================================================================== (Binary files differ) Property changes on: trunk/matplotlib/test/test_plots/baseline/TestFill/fill_units.png ___________________________________________________________________ Added: svn:mime-type + application/octet-stream This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.