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Safer - Compatible Updates to Fix Vulnerable Dependencies

Status: Open.

#75 In yuch7/cwlexec;

· safer-bot opened on Jul 16, 2025

dockerOptions.sh as documented fails on short options

Status: Open.

#71 In yuch7/cwlexec;

· fthommen opened on Nov 15, 2022

consider using 'cwljava' for CWL parsing

Status: Open.

#65 In yuch7/cwlexec;

· mr-c opened on Oct 1, 2021

Don't *copy* result files.

Status: Open.

#63 In yuch7/cwlexec;

· vinjana opened on Feb 5, 2021

Works with Jsrun?

Status: Open.

#55 In yuch7/cwlexec;

· kshitij-v-mehta opened on Nov 6, 2019

CWLEXEC doesn't correctly run several subworkflows

Status: Open.

#54 In yuch7/cwlexec;

· KateSakharova opened on Sep 11, 2019

CWLEXEC fails with Hibernate exception for workflows with more than 20 steps

Status: Open.

#53 In yuch7/cwlexec;

· mscheremetjew opened on Sep 10, 2019

Regression after June 7th +29 CWL conformance tests fail

Status: Open.

#52 In yuch7/cwlexec;

· mr-c opened on Aug 28, 2019

Error: Could not find or load main class

Status: Open.

#50 In yuch7/cwlexec;

· ionox0 opened on Jun 28, 2019

Complete support for CWL 1.0

Status: Open.

#47 In yuch7/cwlexec;

· susheel opened on Jun 18, 2019

SchemaDefRequirement section: Imports of type definitions are not supported

enhancementNew feature or request New feature or request

Status: Open.

#32 In yuch7/cwlexec;

· mscheremetjew opened on Sep 28, 2018

SingularityRequirement

enhancementNew feature or request New feature or request

Status: Open.

#31 In yuch7/cwlexec;

· vinjana opened on Sep 25, 2018