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The Verena Institute

An NSF Biology Integration Institute

About Verena

🦠 We're an NSF-funded collaboration working to predict viral ecology, evolution, and emergence. Our research often uses network science and machine learning to analyze and predict complex systems, especially host-virus networks.

💻 Read more on our website, where you can also download all of our publications as PDFs (even if they're paywalled somewhere else).


On our Github...

👩‍💻 Code for several ongoing and published projects is available here.

🔢 You can also access datasets, like

  • VIRION, a database of host-virus interactions
  • CLOVER, the hand-curated backbone of VIRION (which includes non-viral pathogens)
  • datacov, a database of nearly 100,000 samples tested for bat coronaviruses since 1996
  • the insectDisease R interface to the Ecological Database of the World's Insect Pathogens.

✍️ There's also templates for sharing your own data, including for

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  1. virion virion Public

    An open database of vertebrate-virus interactions

    R 43 9

  2. clover clover Public

    Four-in-one value pack of host-virus association data

    R 27 4

  3. insectDisease insectDisease Public

    An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)

    TeX 14 2

  4. epizootic epizootic Public

    An R package for spatially explicit population models of disease transmission in wildlife

    R 4 1

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