tximport

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complextissue / pytximport

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Feature-rich Python implementation of the tximport package for gene count estimation.

python bioinformatics rna-seq deseq2 rna tximport anndata scverse

Updated Oct 24, 2025
Python

tdayris-perso / rna-dge-salmon-deseq2

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Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

reproducible-research bioinformatics-pipeline deseq2 salmon differential-expression snakemake-workflows tximport

Updated Aug 18, 2021
Python

bissessk / RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

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Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

linux unix bioinformatics rna-seq r hpc rstudio ngs next-generation-sequencing bioinformatics-pipeline rnaseq deseq2 rna-sequencing salmon rna-seq-analysis rna-seq-data ngs-analysis rna-seq-pipeline salmon-deseq2 tximport

Updated Aug 28, 2020
Shell

washingtoncandeia / kallisto_sleuth

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Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2

rna-seq deseq2 rna-seq-analysis kallisto sleuth tximport

Updated Dec 10, 2019
R

washingtoncandeia / tximport

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Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.

rna-seq-analysis kallisto tximport