Generate realizations of stochastic processes in python.
probability stochastic stochastic-differential-equations stochastic-processes stochastic-simulation-algorithm stochastic-volatility-models
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Dec 9, 2022 - Python
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stochastic-simulation-algorithm
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StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
python bioinformatics systems-biology console-application stochastic-simulation-algorithm kinetic-modeling
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Jun 20, 2025 - Python
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
python simulation cython crn chemical-reaction-networks stochastic-simulation-algorithm parameter-identification
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Mar 29, 2025 - Jupyter Notebook
🦜 DISCOTRESS 🦜 is a software package to simulate and analyse the dynamics on arbitrary Markov chains
markov-model simulation markov-chain kinetic-monte-carlo markov-chains stochastic-processes stochastic-simulation-algorithm markov-process random-walk ctmc enhanced-sampling stochastic-simulation dtmc network-dynamics rare-events k-shortest-paths markovian-dynamics continuous-time-markov-chain simulation-algorithms
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Jul 29, 2021 - C++
Multiscale Modelling Tool - mathematical modelling without the maths
statistical-mechanics nonlinear-dynamics mathematical-modelling stochastic-simulation-algorithm individual-based-modelling bifurcation-analysis
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Mar 18, 2022 - Python
ANTARES Visualizations
r energy simulation shiny optimization leaflet plotly linear-programming electric monte-carlo-simulation shiny-apps dygraphs rte stochastic-simulation-algorithm renewable-energy adequacy manipulatewidge bilan previsionnel tyndp
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Jan 3, 2025 - R
Networkx implementation of the SIS epidemic model for large and heterogeneous networks
networkx computational-physics complex-networks epidemics stochastic-processes stochastic-simulation-algorithm markovian-epidemic-processes gillespie-algorithm markovian-processes
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Aug 12, 2023 - Python
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
systems-biology stochastic-process chemical-reaction-networks stochastic-simulation-algorithm gene-network gillespie-algorithm delay-systems
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Apr 17, 2025 - Julia
This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286
matlab biological-simulations stochastic-process multilevel-models numerical-simulations stochastic-simulation-algorithm numerical-analysis monte-carlo-methods biological-networks multilevel importance-sampling multilevel-monte-carlo stochastic-reaction-networks stochastic-biological-systems
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Jan 17, 2023 - MATLAB
Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.
fortran networkx computational-physics complex-networks epidemics stochastic-processes stochastic-simulation-algorithm markovian-epidemic-processes gillespie-algorithm markovian-processes
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Sep 15, 2024 - Fortran
Learn to get started using DISCOTRESS with these tutorials! Then apply to your own Markov chains in ecology 🦜🌴 economics 💸📈 biophysics 🧬🦠 and more!
markov-model simulation markov-chain tutorials kinetic-monte-carlo markov-decision-processes stochastic-simulation-algorithm markov-process random-walk ctmc discrete-event-simulation stochastic-simulation dtmc network-dynamics rare-events markovian-dynamics markov-decision-process stochastic-dynamics
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Sep 12, 2021 - Brainfuck
Demonstrates how to price derivatives in a Heston framework, using successive approximations of the invariant distribution of a Markov ergodic diffusion with decreasing time discretization steps. The framework is that of G. Pagès & F. Panloup.
stochastic-differential-equations stochastic-simulation-algorithm stochastic-volatility-models pricing-derivatives levy-processes ergodic-stationary-processes heston-model
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Apr 14, 2019 - C++
codes from theorems in the field of stochastic processes
lambda wiki scalar stochastic population central stochastic-processes stochastic-simulation-algorithm theorems weibull-distribution rayleigh-distribution poisson-probability
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Aug 2, 2020 - MATLAB
Usefull models simulating stochastic processes in different times scales with or without reproduction of long-term percistence (Hurst-Kolmogorov behaviour). Also a simple tool for determening the Hurst coefficient is provided. All code is in the form of Matlab functions.
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Feb 5, 2019 - MATLAB
A Python framework to build and simulate stochastic rules-based models.
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Nov 12, 2024 - Jupyter Notebook
Fractional calculus and commercial air transport models used in: arxiv.org/abs/1601.07655
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Nov 28, 2016 - MATLAB
An extension to the MASON simulation framework introducing agent-based modelling via dependency-aware stochastic simulation algorithms, powered by aspect-oriented programming.
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Dec 14, 2021 - Java
Implementation of SIS epidemic model for large and heterogeneous networks
networkx computational-physics complex-networks epidemics stochastic-processes stochastic-simulation-algorithm markovian-epidemic-processes gillespie-algorithm markovian-processes
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Aug 12, 2023 - Python
A set of integrators for the Langevin equation.
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Oct 27, 2023 - Julia
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
python docker simulation systems-biology computational-biology stochastic-simulation-algorithm dynamical-modeling sbml sed-ml biochemical-networks combine-archive gillespy2 stochss stochkit omex-metadata biosimulators
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Feb 25, 2022 - Python
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