Scientific Agent for evidence-grounded evaluation of cell-therapy products.
💊🩺🩹 List of Awesome Open-Source Regenerative Medicine Tools🌟 Star if you like it! 🌟
Jupyter notebooks for analyzing data from a study on Shh+ cell lineage and gene expression in regenerating axolotl spinal cords.
Originally developed for scientific outreach presentation at the SFBD-JSDB Conference 2022 held at Strasbourg.
Single-cell RNA-seq analysis — Pandey et al. 2022
Comprehensive Enumeration of Cancer Stem-like Cell Heterogeneity Using Deep Neural Network
OSCI: Ontology for Stem Cell Investigations
ColonyQuant is a command-line toolkit for fully automated quantification and morphometric analysis of AP-stained embryonic stem cell colonies, with integrated visualization and clustering workflows.
"Transcriptional Heterogeneity and Cell Cycle Regulation as Central Determinants of Primitive Endoderm Priming" published in eLife (2022)
A collection of summaries and reflective notes from molecular biology courses, including genetics, epigenetics, gene regulation, genome interpretation, stem cells and RNA biology, designed to strengthen fundamental knowledge and bridge classical molecular biology with modern applications in cancer research and bioinformatics.
Hybrid Analytical–Numerical Modeling of Electroporation Dynamics and Swept-Frequency Impedance Spectroscopy for Label-Free Characterization of hMSCs in a Microfluidic Platform — Sherif, Ghallab & Ismail
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
King's College London MSc Dissertation Knowledge Exchange Program Project
Un proyecto universitario que consiste en dos etapas. La primera; recopilar información pública de la web utilizando webscraping avanzado, acerca de diferentes casos de estudio sobre células madre pluripotentes humanas. Finalmente, analiza los aspectos que influyen en la duración de los estudios mediante un árbol de decisión regresor.
A repository for our science project on bioethics
An open-source, calibrated multiphysics digital twin for Type 1 Diabetes islet encapsulation and hypoimmune organoid transplant design.
Computational analysis of gene expression profiles to uncover key biomarkers distinguishing bone marrow and peripheral blood CD34+ stem cells, with applications in diagnostics and stem cell transplantation.
The aim was to re-analyze published of RNAseq differential expression datasets
CellDreamer: World Models for Stem Cell Differentiation
Code for the MiSTR microfluidic stem cell atlas study of early human neural patterning.
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