Generalized SEIR Epidemic Model (fitting and computation)
matlab usa fitting china france johns-hopkins-university italy mlx compartmental-models seir coronavirus covid-19 death-rate recovery-rate
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Apr 11, 2024 - MATLAB
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COVID-19 infectious forecasting using SEIR model and R0 estimation
forecasting-model seir wuhan-coronavirus novel-coronavirus ncov-2019 novel-coronavirus-2019 covid-19 sars-cov-2
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Mar 26, 2021 - Jupyter Notebook
"Life simulation" of a SEIR inspired model to better understand pandemic using python
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Mar 20, 2021 - Python
Analysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.
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Dec 8, 2022 - Jupyter Notebook
A general framework for quick epidemiological ABM models
simulation abm agent-based-modeling epidemiology r-package epidemics sir r-programming sir-model seir rpack covid-19 seir-model rpkg
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Dec 23, 2025 - R
A set of "real-time" covid19 county-level dashboards w/ national and state choropleths for monitoring localized infection resurgences as distancing, testing and tracing measures evolve.
real-time dashboard jupyter jupyter-notebook bayesian-methods rt bokeh differential-equations choropleth r0 seir infectious-disease-models health-policy coronavirus-real-time covid-19 covid19 sars-cov-2 covid19-data county-level effective-reproductive-number
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Apr 12, 2023 - Python
Agent based model for epidemics based on the SEIR system.
javascript agent simulator biology agent-based-modeling numerical-methods epidemics seir coronavirus covid covid19
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Apr 5, 2020 - JavaScript
Model COVID-19 spreading via dynamic SEIR model
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Mar 24, 2020 - Jupyter Notebook
Python module for COVID-19 exponential growth modelling and dynamics modelling by using user-defined SEIR(D) compartmental system.
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Jan 4, 2021 - Python
MEME: Mathematical Epidemiological Model using Eovolution algorithmn for the COVID-19 virus 针对2020年初武汉市的基于遗传算法的新冠病毒感染发展预测模型
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Feb 19, 2023 - Python
COVID prediction and simulation based on mobility data in federated environment
machine-learning regression mobility federated-learning multitask-learning epidemic-model seir epidemic-simulations covid-19
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Mar 19, 2023 - Jupyter Notebook
Workshop Website
workshop simulation abm rstats agent-based-modeling epidemiology network-analysis sir network-diffusion seir covid-19
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Mar 24, 2025 - R
SEIR Model in JavaScript
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Jan 5, 2023 - TypeScript
The following files are the codes used in the paper Transmission dynamics and baseline epidemiological parameter estimates of Coronavirus disease 2019 (COVID-19) pre-vaccination: Davao City, Philippines
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Nov 19, 2022 - MATLAB
Infectious disease models implemented in python
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May 25, 2020 - Python
An adapted SEIR model which accounts for three immunity levels, one for naive infections, one for vaccinated infections and one for people with prior immunity. We begin with the population model then account for an age structure by splitting each compartment into 4 age groups. We then account for four different social distancing measures.
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Aug 25, 2021 - Jupyter Notebook
A prediction of the number of COVID-19 infections during a fully-open (no preventative measures) semester for the University of Virginia using the SEIR model.
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Aug 10, 2020 - Jupyter Notebook
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