Structural biology superpowers for AI coding agents: PyMOL, ChimeraX, AlphaFold DB, RCSB PDB, UniProt, and Rosetta workflows.
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Updated
Jul 17, 2026 - Python
Structural biology superpowers for AI coding agents: PyMOL, ChimeraX, AlphaFold DB, RCSB PDB, UniProt, and Rosetta workflows.
A comparative and ablation study exploring different models for protein-ligand binding affinity prediction. The model categories studied in this project include traditional machine learning, graph neural networks, and structural deep learning models.
Tool for fast inspection of PDB molecular files inside the terminal.
Automated pipeline for extracting FASTA sequences from RCSB PDB and performing multiple sequence alignment of flavivirus NS3 proteins using Clustal Omega.
RCSB Protein Data Bank experimental structures
WebGPU molecular viewer for the RCSB PDB — browse, search, and display up to four structures at once, entirely in the browser
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