pertpy

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princello / perturbseq-starter

Runnable Perturb-seq analysis pipeline (guide assignment, Mixscape, pseudobulk-vs-per-cell DE, E-distance) on the Papalexi 2021 ECCITE-seq CRISPR screen — pertpy + scanpy

bioinformatics computational-biology single-cell differential-expression scanpy crispr-screen perturb-seq pertpy

Updated Jun 19, 2026
Python

TaufiaHussain / pertpy-perturbation-analysis

Star 0

PertPy-based perturbation analysis pipeline using a CRISPR Perturb-seq dataset with reproducible Python scripts.

python bioinformatics computational-biology scrna-seq crispr single-cell scanpy perturb-seq pertpy

Updated Feb 8, 2026
Python

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