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mpox

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UPHL-BioNGS / Cecret

Reference-based consensus creation

bioinformatics nextflow phylogenetics public-health variant-calling amplicon viral-genomics wastewater mafft ivar amplicon-sequencing pangolin measles freyja nextflow-pipeline sars-cov-2 consensus-sequence iqtree nextclade mpox

Updated Sep 1, 2026
Nextflow

nextstrain / mpox

Nextstrain build for mpox virus

metadata bioinformatics pipeline pathogen phylogenetics genbank augur nextstrain auspice virus-evolution genomic-epidemiology monkeypox mpox

Updated Aug 27, 2026
Python

CDCgov / tostadas

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

python docker metadata bioinformatics rna-seq pipeline nextflow genetics azure sequencing conda singularity genbank liftoff ncbi sra vadr scicomp nf-tower mpox

Updated Sep 3, 2026
Python

rki-mf1 / MpoxRadar

MpoxRadar frontend codebase: an interactive dashboard for genomic surveillance of MPXV.

dashboard frontend hpi rki genomic-surveillance mpox

Updated Dec 2, 2023
Python

j03-dev / skin

detecting mpox from skin images

machine-learning ai computer-vision cnn api-rest mpox

Updated Jan 23, 2026
Python

sabaaslam6038 / CEL

CEL Continual Learning

artificial-neural-networks lstm-neural-networks continual-learning elastic-weight-consolidation measles disease-prediction fisher-information-matrix influenza-data static-learning domain-incremental-learning mpox disease-outbreak-prediction

Updated Jan 21, 2024
Python

DataStalker / Mpox-Analysis

This repository features visualizations of monkeypox cases and deaths from Jan 2022 to Aug 2024. It includes a choropleth map and scatter plots analyzing the distribution and trends of the disease worldwide

visualization data-science r geospatial biostatistics rstats data-analysis epidemiology chloropleth monkeypox mpox

Updated Aug 31, 2024
R

sachith345 / mpox-therapeutic-target-discovery-using-bioinformatics-cadd-pipeline

Integrated Bioinformatics and Computer-Aided Drug Design (CADD) workflow for identifying conserved therapeutic targets and potential inhibitors against Mpox virus.

python bioinformatics genomics computational-biology bioinformatics-pipeline drug-discovery comparative-genomics molecular-biology biotechnology virology virtual-screening structural-bioinformatics protein-modeling protein-model-quality-estimation mpox admet-prediction

Updated Jun 1, 2026

MOISECHRIST / NPHL_Mpox_WGS_Analysis

This repository contains scripts to assist the Cameroon NPHL Bioinformatic Team in analyzing Mpox WGS data for outbreak tracking and characterization.

bash phylodynamics wgs-analysis mpox nfcore-viralrecon

Updated Feb 10, 2026
Python

justoneye / Analisis-MPOX-Colombia

Como parte del curso de Fundamentos en Analítica de Datos dictado por Correlation One en alianza con MinTIC se presenta el proyecto de aplicación "Análisis de Casos Positivos de Viruela Símica en Colombia"

data-science data looker excel data-visualization data-analysis cvs dataframe datos-abiertos mintic correlation-one looker-studio mpox

Updated Jun 14, 2023

ankushgpta2 / tostadas

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

python docker metadata bioinformatics pipeline nextflow genetics azure sequencing conda singularity genbank liftoff ncbi sra vadr scicomp nf-tower mpox

Updated Jan 17, 2025
Python

smkerr / mpox-wiki-analysis

👀🦠 Evaluating the predictive power of Wikipedia pageviews for mpox cases 🦠👀

r time-series wikipedia mpox

Updated May 21, 2024
TeX

DeRoyace / lightweight-skin-disease-classifier

A machine learning-based system for detecting and classifying skin diseases through image analysis, utilizing deep learning models and classification pipelines.

opencv machine-learning deep-learning cnn-model skin-cancer mobilenet-v2 measles skin-lesion ham10000 skin-disease-classifiction restnet50 monkeypox mpox chickenpox cowpox

Updated Oct 30, 2025
Jupyter Notebook

adnanhaider81 / mpox-vzv-coinfection-2023-pakistan

Publication-linked metagenomic workflow for MPXV and VZV consensus generation and phylogeny

bioinformatics snakemake metagenomics phylogenetics public-health pathogen-genomics vzv mpox coinfection

Updated Jun 1, 2026
Python

sequence-review / mpox

Place to discuss mpox virus sequences

bioinformatics genomics virus-evolution virus-genomes sequence-quality monkeypox mpox

Updated Jan 20, 2024

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