MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
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Nov 6, 2024 - Shell
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mitochondrial
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mgatk: mitochondrial genome analysis toolkit
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Jul 8, 2026 - Python
Organelle Genome Assembler
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Oct 15, 2021 - Perl
Whole genome sequencing analysis pipeline for consumer hardware. 100% local, Docker-powered, free and open source.
docker bioinformatics pipeline genomics vcf ancestry polygenic-risk-scores variant-calling wgs clinvar pharmacogenomics whole-genome-sequencing mitochondrial personal-genomics grch38 deepvariant structural-variants cancer-predisposition telomere pharmcat
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Sep 1, 2026 - Shell
get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
genome transcriptome protein-coding-genes mitochondrial chloroplast contigs plastome genome-skimming
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Feb 15, 2021 - Perl
Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.
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Jan 4, 2022 - Python
Sample size and power for association studies involving mitochondrial DNA haplogroups -
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Jun 22, 2019 - R
nowayout is an ultra-fast automated software pipeline for taxonomic classification of Eukaryotic mitochondrial reads.
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Jun 11, 2026 - Nextflow
Mitochondrial Long-read Iterative Assembly
genome assembly pacbio genome-assembly mitochondrial mitochondrion long-reads minimap2 interative canu
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Jun 4, 2024 - Python
PureVOCTM (Pure Voice of Consciousness) is an open, first-principles framework co-authored with xAI’s Grok. It collapses entropy voids using golden phi intervals, choice-gates, and resonance sieves for 20–40% efficiency gains in ISR, veteran health (FDVFC), and AI safety. CC-BY-SA licensed – no greed, no competition. Build freely.
ai entropy first-principles health biohacking healing ai-safety resonance mitochondrial ai-agents mitochondria veteran pemf voc-fdvfc-isr-ai-er-epr veteran-health
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Mar 6, 2026 - Python
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Aug 1, 2022 - R
This repository contains the codes and additional data utilized in the benchmark study of short read based mitochondrial assemblers for human datasets
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May 9, 2023 - R
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Jul 13, 2026 - Jupyter Notebook
PrecisionCallerPipeline (PCP) automatically takes Precision ID mtDNA Whole Genome Panel (Thermo Fisher Scientific, USA) FASTQ files and outputs BAM files correctly aligned to the rCRS.
mitochondrial mitochondrial-variants mitochondrial-sequences mitochondrial-genomes mitochondrial-genes
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Nov 8, 2021 - Shell
RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"
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Feb 24, 2017 - HTML
Analysis of rare disease patients with ATG7 mutations
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Sep 9, 2021 - HTML
Analyze whole genome sequencing data on consumer hardware with no cloud accounts, subscriptions, or bioinformatics degree needed
python docker workflow bioinformatics pipeline genomics nextflow vcf ancestry variant-calling wgs pharmacogenomics whole-genome-sequencing mitochondrial personal-genomics deepvariant structural-variants nf-core cancer-predisposition pharmcat
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Sep 7, 2026 - Shell
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