Discovering known and novel miRNAs from small RNA sequencing data
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Dec 11, 2025 - Perl
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microrna
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Nov 3, 2021 - Python
This script implements a Selenium WebDriver to automate the access to miRDB - MicroRNA Target Prediction and Functional Study Database and search for microRNAs targets/seeds present in custom mRNA sequences.
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Aug 1, 2022 - Python
transcription-factors r database datascience cancer-genomics rstats r-package tcga-data microrna peer-reviewed
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Feb 2, 2026 - R
An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data
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Jan 27, 2020 - R
Model to evaluate the distribution of Regular Expressions (REs) across a ranked sequence list.
bioinformatics unsupervised generative-model bayesian-inference single-cell rna-seq-analysis probabilistic-models motif-analysis microrna regulatory-activity
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Aug 28, 2026 - R
microRNA validation using Spark framework
spark ngs mirna ngs-analysis microrna ngs-pipeline microrna-target-prediction microrna-prediction plant-microrna
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Sep 28, 2021 - Java
miRPV is an automated tool that enables users to predict and validate microRNAs from genome/gene sequences. miRPV Features: Predict novel pre-miRNA from any given sequence Predict secondary structure stability Predict authentic pre-miRNA Predict novel mature miRNA Predict novel miRNA targets
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Jun 7, 2024 - Perl
Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release
data analysis mapping sequencing prediction small rna patch quantification mirna smallrna mirdeep microrna mirdeep2
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Oct 8, 2021 - Perl
"Conserved microRNAs and Flipons Shape Gene Expression during Development by Altering Promoter Conformations" International Journal of Molecular Sciences 24, no. 5: 4884
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Feb 16, 2023 - Jupyter Notebook
miRNA Discovery Project : simple, easy-to-use, rule-based miRNA candidate discovery with multithread acceleration
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Sep 23, 2017 - Python
Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
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Nov 17, 2017 - R
Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)
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Jun 6, 2017
Model to evaluate the distribution of Regular Expressions (REs) across a ranked sequence lists.
bioinformatics unsupervised generative-model bayesian-inference single-cell rna-seq-analysis probabilistic-models motif-analysis microrna regulatory-activity
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May 1, 2026 - R
A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL
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Nov 21, 2018 - Jupyter Notebook
An R package to impute miRNA activity using protein-coding gene expression
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Dec 26, 2019 - R
Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"
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Jan 9, 2018 - HTML
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