🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire...
Python library for simple and complex indels.
acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.
Flexible Trio DNV detection on existing VCFs.
Genome assembly and variant benchmarks for Chinese Quartet
SNV and indel genotyping by Nanopore Amplicon Sequencing and subsequenct variant calling
Workflow for biological validation of germline SNP and indel variant datasets.
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