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immunogenicity

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All 7 Python 5 Jupyter Notebook 2

KrishnaswamyLab / ImmunoStruct

[nature machine intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction

deep-learning computational-biology prediction immunology infectious-diseases multimodal-learning multimodal multimodal-deep-learning self-supervised-learning immunogenicity alphafold contrastive-learning nature-machine-intelligence immunogenicity-prediction cancer-immunology alphafold2 ai4science ai-for-science multimodal-ai ai-for-biology

Updated Mar 5, 2026
Python

daylight-00 / DeepXeno

Structure-informed Prediction of Xenotransplantation Immunogenicity

computational-biology mhc-binding-prediction immunogenicity

Updated Mar 6, 2025
Jupyter Notebook

Gavin-Borges / SESTRAV

Dry-lab computational pipeline for prioritizing viral CD8+ T-cell epitopes by predicted immunogenicity across nine viral pathogens (CMV, EBV, HBV, HCV, HPV, HIV-1, IAV, DENV, SARS-CoV-2). RF/XGBoost production track; GINEConv+ESM-2 GNN research track. OpenSSF Passing.

machine-learning bioinformatics snakemake computational-biology pytorch influenza hiv computational-immunology epitope-prediction graph-neural-networks pytorch-geometric immunogenicity sars-cov-2 vaccinology human-papillomavirus epstein-barr-virus structural-immunology

Updated Sep 7, 2026
Python

eamonbyrne / thyme

Proteome-Aware Redesign of Therapeutic Proteins Toward Reduced Immunogenicity

protein-structure directed-graph proteome protein-design protein-engineering immunogenicity therapeutics

Updated Jun 8, 2026
Python

antigenomics / mhcmatch

Ultrafast MHC binding prediction and epitope's mimic search. Immunogenicity scorer. Designing personalised cancer vaccine cassettes

cancer presentation mhc hla mrna affinity vaccine mimic neoantigen epitope immunogenicity

Updated Sep 6, 2026
Python

stevezkw1998 / NeoRepro

Leakage-aware, patient-level, reproducible benchmark resource for public MHC-I neoantigen predictors

benchmark machine-learning bioinformatics reproducibility neoantigen immunogenicity neoantigen-prediction cancer-immunology mhc-class-i patient-level-evaluation

Updated Aug 21, 2026
Python

daylight-00 / PREpiBind

Protein Representation-integrated Epitope-MHC Class II Binding Prediction

computational-biology mhc-binding-prediction immunogenicity

Updated Apr 15, 2026
Jupyter Notebook

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