autophagy

RAPSAP is a comprehensive archive of protein structures that pertain specifically to autophagy, aimed at improving structural understanding of the biological process

• Updated May 3, 2023

Code for the Cancers paper (Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer)

• Updated Aug 17, 2018
• R

Code for the Oncotarget paper (Systematic characterization of autophagy-related genes during the adipocyte differentiation using public-access data.)

• Updated Nov 3, 2017
• TeX

Pipeline for high-throughput analysis of RFP/GFP ratios in vacuoles

• Updated Jan 7, 2020
• R

Deterministic, explainable autophagy/lysosome dependency QC for single-cell expression data.

• Updated Jun 5, 2026
• Rust

Experiments and scripts used to prepare CELLULAR, a dataset consisting of cells undergoing autophagy.

• Updated Apr 11, 2024
• Python

Code for the IJMS paper (Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation)

• Updated Jun 20, 2018
• R

Experimental brainwave entrainment goggles (Dementia / Mentalhealth).

• Updated Sep 17, 2023
• C++

• Updated Jun 4, 2026
• Jupyter Notebook

A research compendium: Transcriptional regulation of autophagy during adipocyte differentiation

• Updated Sep 7, 2020
• R

Research compendium for the preprint "Hierarchical Regulation of Autophagy During Adipocyte Differentiation"

• Updated Jul 13, 2021
• R

A Hub of central Human ATG genes (autophagy-related genes) based on recurrences in various databases on Autophagy

• Updated Aug 6, 2025
• Python

Free Android open-source app that tracks what your body is doing while fasting

• Updated Aug 29, 2026
• Kotlin

Code for the Cells paper (Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis)

• Updated Sep 7, 2020
• R

Code for the (unpublished) paper ( Regulation of autophagy in response to oxidative stress)

• Updated Sep 28, 2018
• R

A signed readout of organelle dynamics — biogenesis minus selective clearance — from ordinary expression data. Predicts mitochondrial drug and genetic vulnerability across 1,066 cancer cell lines.

• Updated Aug 14, 2026
• HTML

Code for the book chapter (Anti-cancer effect of RKIP via modulating autophagy during metastasis)

• Updated Jan 30, 2019
• R

Scripts for reproducing the poster: Co-regulation of RKIP and autophagy genes by VEZF1 and ERCC6 in prostate cancer

• Updated Jan 19, 2019
• R

Metabolic Calculator

• Updated Sep 3, 2026
• HTML

Xerophagon is a fasting web application

• Updated May 31, 2026
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