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all-of-us

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All 6 Jupyter Notebook 3 Python 2 R 1

pwatrick / DrugRepurposingToolKit

bioinformatics genomics computational-biology biomedical-informatics drug-repurposing transcriptomics electronic-health-record all-of-us precision-medicine drug-repositioning

Updated Aug 7, 2024
R

will-marella / querygap-mcp

Use ChatGPT, Claude, or Codex to search public dbGaP, UK Biobank, and All of Us metadata through an open-source MCP.

python mcp all-of-us uk-biobank dbgap biomedical-data research-tools model-context-protocol mcp-server scientific-metadata

Updated Aug 16, 2026
Python

rashmitakudamala / ehr-trajectory-functional-decline

Predicting early functional mobility decline using longitudinal biomarker trajectories from OMOP EHR data (AMIA submission).

machine-learning lightgbm ehr all-of-us omop health-informatics clinical-prediction

Updated Mar 9, 2026
Jupyter Notebook

sabowler / lantern-gwas

Genome-wide association study pipeline for primary lymphedema, secondary lymphedema, and lipedema within the All of Us Research Program (data v8)

python bioinformatics gwas genomics all-of-us hail grch38 lymphedema lipedema

Updated Jun 4, 2026
Python

Nintencode / From-Millions-to-Thousands-Scalable-Genomic-Analysis-of-BRCA1-and-2-Variants

This project analyzes BRCA1/BRCA2 variants in Latin American ancestry participants from the All of Us Research Program. Using computational workflows and prediction models, we investigate variant pathogenicity to address gaps in genetic risk interpretation in underrepresented populations.

python machine-learning bioinformatics all-of-us

Updated Apr 30, 2026
Jupyter Notebook

Auston-B / sleep-predict-capstone

Predicting sleep duration and consistency from Fitbit wearables in 45,259 All of Us participants — ML models, sleep phenotypes, and subgroup fairness. SIADS 699 capstone.

python data-science machine-learning scikit-learn fitbit public-health sleep all-of-us kmeans-clustering fairness wearables health-equity streamlit

Updated Aug 18, 2026
Jupyter Notebook

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