A list of example files to start using the Linux Command Line interface (CLI).
See the Wiki in this repository.
| Date | Description |
|---|---|
| 2022εΉ΄10ζ01ζ₯ | Cleanup and updates (removed legacy files, added scripts) |
| 2019εΉ΄12ζ04ζ₯ | Added FASTQ files, Updated README maker with links |
| 2019εΉ΄12ζ03ζ₯ | Refactoring the companion website (now using github wiki). |
| 2019εΉ΄02ζ20ζ₯ | Readme file generator added (_readme_maker/make_readme) |
| 2018εΉ΄10ζ20ζ₯ | Added a "misc" subdirectory with examples taken from another training set |
| 2018εΉ΄03ζ05ζ₯ | Package updated, "files" directory added |
| 2018-02-29 | First release |
π misc 7.4M
This is an extra subdirectory, it contains its own README file for details
π archives 16K
Archives to test decompression tools
π scripts 72K
- N50.pl
- changeContigCoordBam.py
- fasta_translate.py
- gutenwords-plotzipf.py
- gutenwords-topandplot.py
- gutenwords_0.py
- gutenwords_1.py
- gutenwords_2.py
- linkweb.sh
- phantarun.py
- prodigal2vcontact.py
- remap.py
- start_denovo.sh
π phage 4.5M
A set of files to test parsing of bioinformatics format, mostly related to PhiX phage.
- GCF_000840245.1_ViralProj14204
- README.txt
- annotation_hashes.txt
- assembly_status.txt
- md5checksums.txt
- vir_assembly_report.txt
- vir_assembly_stats.txt
- vir_cds_from_genomic.fna
- vir_feature_count.txt
- vir_feature_table.txt
- vir_genomic.fna
- vir_genomic.gbff
- vir_genomic.gff
- vir_protein.faa
- vir_protein.gpff
- vir_rna_from_genomic.fna
- vir_translated_cds.faa
- π reads
π files 2.4M
Common file formats, both binary (e.g. PNG image) and text files (e.g. CSV). A PDF document is included to see how less can also handle them.
