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1. OpenOmics/genome-seek OpenOmics/genome-seek Public

   Clinical Whole Genome and Exome Sequencing Pipeline

   Python 29 12

2. RNA-seek RNA-seek Public

   A comprehensive quality-control and quantification RNA-seq pipeline

   Python 10 13

3. OpenOmics/metavirs OpenOmics/metavirs Public

   Viral Metagenomics Assembly and Annotation Pipeline

   Python 6 1

4. CCBR/HERVx CCBR/HERVx Public

   Pipeline to characterize Human Endogenous Retrovirus (HERV) expression

   Shell 5 3

5. OpenOmics/modr OpenOmics/modr Public

   An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

   Python 6 1

6. OpenOmics/space-seek OpenOmics/space-seek Public

   Spatial-sequencing: The final frontier. These are the voyages of the 10x Visium pipeline, space-seek.

   Python 1