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@silveriron
silveriron
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Eun Cheol Kim silveriron

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silveriron /README.md

About Me

  • Eun Cheol Kim (김은철, 金恩徹), also known as silveriron
  • Ph.D. Student in Computational Chemistry at Seoul National University
  • Polyglot Researcher
    • Native
      • Korean
    • Fluent / Business
      • American English (Academic purposes)
      • Japanese (Business level, JLPT N1)
      • Simplified Chinese (Proficient in reading/writing, HSK 5)
    • Basic / Familiar with
      • French, German, Russian, and Arabic (Introductory level)
    • Open to international collaborations and always excited to learn new languages and cultures

Research Interests

  • Molecular Dynamics (MD) Simulation
  • Quantum Mechanics (QM) Simulation
  • Cheminformatics & Bioinformatics
  • Protein Modeling
  • Machine Learning (ML) & Artificial Intelligence (AI) for Science
  • Scientific Computing

Technical Skills

  • MD Simulation: LAMMPS, OpenMM, CHARMM-GUI, MDAnalysis, MDTraj
  • QM Simulation: Gaussian, GAMESS, Avogadro
  • Cheminformatics & Bioinformatics: RDKit, BioPython
  • Protein Modeling
    • Structure Prediction: AlphaFold3/2, RoseTTAFold2/1, ESMFold, OmegaFold, Chai-1, Boltz-2/1
    • Docking Simulation: AutoDock Vina
  • ML & AI for Science
    • Frameworks: PyTorch, TensorFlow (Keras), Scikit-learn, imbalanced-learn
    • Foundation Models: Hugging Face Transformers, MoLFormer, ProtT5
    • Explainable AI: SHAP, Captum
  • Scientific Computing: Python (Numpy, Pandas, SciPy), C, FORTRAN, Bash
  • Data Visualization: ChimeraX, Ovito, VMD, PyMol, Matplotlib, Gnuplot, Igor64
  • Operating Systems & HPC: Linux (Rocky Linux, CentOS, Ubuntu), MacOS, Windows, SLURM
  • Environments: Git, VSCode, Vim, LaTeX, Anaconda

Publications

  • E. C. Kim and YounJoon Jung*, (In preparation)
  • E. C. Kim, D. J. Chun, C. B. Park and B. J. Sung*, "Machine Learning Predicts the Glass Transition of Two-Dimensional Colloids Besides Medium Range Crystalline Order", Phys. Rev. E 108, 044602 (2023) DOI: https://doi.org/10.1103/PhysRevE.108.044602

Honors & Awards

  • Yoon Jeonsu & Lee Samrak (윤전수 & 이삼락) Scholarship, Seoul National University Foundation (Mar 2026 – Aug 2026)
  • Best Poster Award, 140th Summer Symposium of Physical Chemistry Division, Korean Chemical Society (Jun 2023)
  • Best Poster Award, 137th Summer Symposium of Physical Chemistry Division, Korean Chemical Society (Jun 2022)
  • Magna Cum Laude, Department of Chemistry, Sogang University (Feb 2022)

Teaching Experience

  • Graduate Teaching Assistant at Seoul National University
    • Chemistry (Sep 2025 – Dec 2025)
    • Chemistry Lab (Mar 2025 – Jun 2025)
  • Graduate Teaching Assistant at Sogang University
    • General Chemistry 2 (Sep 2023 – Dec 2023)
    • General Chemistry Lab 1 (Mar 2023 – Jun 2023)
    • Physical Chemistry Lab 2 (Sep 2022 – Dec 2022)
    • Physical Chemistry Lab 1 (Mar 2022 – Jun 2022)

Education & Affiliation

  • Seoul National University, Seoul, Republic of Korea (Mar 2025 – Present)
    • Ph.D. Student in Chemistry | Advisor: Prof. YounJoon Jung
  • Sogang University, Seoul, Republic of Korea (Mar 2022 – Feb 2024)
    • M.S. in Chemistry | Advisor: Prof. Bong June Sung
  • Sogang University, Seoul, Republic of Korea (Mar 2015 – Feb 2022)
    • B.S. in Chemistry & B.Ed. in Educational Culture (Double Major)

Contacts

Miscellaneous

Why silveriron?

  • In Korean, 은 (Eun) and 철 (Cheol) are homonyms for silver ($^{47}\text{Ag}$) and iron ($^{26}\text{Fe}$), respectively. It's a chemical pun on my own name.

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