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Cancer systems biology • Single-cell phenomics

36 followers · 245 following

Achievements

Achievement: Quickdraw Achievement: Starstruck Achievement: Pull Sharkx2 Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Quickdraw Achievement: Starstruck Achievement: Pull Sharkx2 Achievement: Arctic Code Vault Contributor

Organizations

@rohannart @coresiaorg

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rraadd88 /README.md

Systems biology

`intom`⿻Perturbational robustness estimation using `int`egrative `om`ics data

build GNU Licence Issues

`chrov`🧬Genomes to proteins, multi-level visualization library

GitHub Repo stars Downloads GNU License Issues

`parag`🎆Interactive visualization of higher-order graphs in Python

GitHub Repo stars Downloads GNU License Issues

Synthetic biology

`beditor`🔂A workflow for designing libraries of sgRNAs for CRISPR base editing

GitHub Repo stars Downloads GNU License Issues

Single-cell phenomics

`htsimaging`🔬Python package for high-throughput single-cell imaging analysis

GitHub Repo stars Downloads GNU License Issues

Machine learning

`interpretable`🧰toolkit for interpretable learning on graphs

Downloads GNU License Issues

Bioinformatics

`dseq`🧱Deep sequencing analysis in dataframes

Downloads GNU License Issues

General-purpose toolbox

`roux` 🧰Convenience functions in Python

Downloads GNU License Issues

⬆️Solo-coding

⬇️Collaborative coding:

`safepy`🕸️Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

`SGAtools`(🇷)One-stop analysis and visualization of array-based genetic interaction screens

`removestar`️⃣Tool to automatically replace 'import ' in Python files with explicit imports

`yeast_segmentation`🔬User friendly mask-rcnn segmentation for images of yeast cells

Pinned Loading

chrov chrov Public

🧬Genomes to proteins, multi-level visualization library

Python 17 1
beditor beditor Public

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

Python 19 5
htsimaging htsimaging Public

🔬Python package for high-throughput single-cell imaging analysis.

Python 7 1
parag parag Public

parag🎆Interactive visualization of higher-order graphs in Python (demo: https://rraadd88.github.io/parag)

Jupyter Notebook 3
baryshnikova-lab/safepy baryshnikova-lab/safepy Public

Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

Python 46 25
asmeurer/removestar asmeurer/removestar Public

Tool to automatically replace 'import *' in Python files with explicit imports

Python 181 12