Zicheng Wang princello
Stars
Registry for scverse ecosystem packages
Meta-analysis toolkit in Python: FE/DL/REML pooling, effect sizes, prediction intervals, Egger's test, forest & funnel plots
π An open-source, hands-on curriculum bridging the gap from basic RL concepts to LLM alignment, RLVR, and advanced Agentic systems.
One multi-sample scRNA-seq scatter-gather pipeline (QC -> cluster -> markers -> aggregate) implemented in BOTH Snakemake and Nextflow, sharing the same Python stage scripts β reproducible workflow-...
Runnable single-cell ATAC-seq pipeline (TSSe QC, tile matrix + spectral clustering, gene-activity annotation, MACS3 peaks + differential accessibility + TF-motif enrichment) on 10x PBMC-5k β snapATAC2
Runnable Perturb-seq analysis pipeline (guide assignment, Mixscape, pseudobulk-vs-per-cell DE, E-distance) on the Papalexi 2021 ECCITE-seq CRISPR screen β pertpy + scanpy
ECFP/QSAR baseline vs a from-scratch D-MPNN on TDC ADMET endpoints, with ensemble + pseudo-label knowledge distillation
princello / staged-recipes
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python pipeline for Nanostring nCounter gene expression analysis β parse, QC, normalize, DE, pathway scoring
ARIS βοΈ (Auto-Research-In-Sleep) β Lightweight Markdown-only skills for autonomous ML research: cross-model review loops, idea discovery, and experiment automation. No framework, no lock-in β works...
Production-grade engineering skills for AI coding agents.
Skills for Real Engineers. Straight from my .agents directory.
Computational pathology pipeline for tissue fibrosis quantification from whole-slide images using foundation model embeddings
A curated collection of fun and creative examples generated with Nano Banana & Nano Banana Proπ, Gemini-2.5-flash-image based model. We also release Nano-consistent-150K openly to support the commu...
Awesome curated collection of images and prompts generated by GPT-4o and gpt-image-1. Explore AI generated visuals created with ChatGPT and Sora, showcasing OpenAIβs advanced image generation capab...
KAG is a logical form-guided reasoning and retrieval framework based on OpenSPG engine and LLMs. It is used to build logical reasoning and factual Q&A solutions for professional domain knowledge ba...
A high-performance distributed file system designed to address the challenges of AI training and inference workloads.
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
A book for Learning the Foundations of LLMs
python tools for TCR:peptide-MHC modeling and analysis
Get up and running with Kimi-K2.6, GLM-5.2, MiniMax, DeepSeek, gpt-oss, Qwen, Gemma and other models.
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.