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1. JinHongDu-Lab/crispyx JinHongDu-Lab/crispyx Public

   crispyx is a Python package for scalable CRISPR and Perturb-seq screen analysis on disk-backed AnnData files. It provides streaming quality control, normalization, pseudobulk aggregation, and diffe...

   Python 3

2. JinHongDu-Lab/causarray JinHongDu-Lab/causarray Public

   causarray is a Python module for simultaneous causal inference with an array of outcomes.

   Jupyter Notebook 7

3. VITAE VITAE Public

   Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior

   Jupyter Notebook 34 8

4. JinHongDu-Lab/scVAEIT JinHongDu-Lab/scVAEIT Public

   Variational autoencoder for single-cell integration and transfer learning.

   Jupyter Notebook 11

5. overparameterized-ensembling overparameterized-ensembling Public

   Ensemble methods in overparameterized learning

   Jupyter Notebook 4

6. JinHongDu-Lab/ensemble-cross-validation JinHongDu-Lab/ensemble-cross-validation Public

   Cross-validation methods designed for ensemble learning

   Python 1