Caleb Lareau caleblareau
-
Memorial Sloan Kettering Cancer Center
- New York, NY
- https://clareaulab.com
- https://orcid.org/0000-0003-4179-4807
- @caleblareau
Highlights
- Pro
Stars
Ensemble of Folded compleXes to predict TCR:pMHC binding
Code, 3D Print Files, BOM and Build Instructions for the DIYNAFLUOR DNA Fluorometer
Protein structure diffusion model for unconditional protein generation and motif scaffolding
Code for the ProteinMPNN paper
An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741
Analysis of mtDNA variants that are synonymous, specifically m7076A>G
machine-readable file format for genomic library sequence and structure
A resource of adverse drug effects extracted from FDA structured product labels
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Protein design and variant prediction using autoregressive generative models
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
A modular, containerized pipeline for ATAC-seq data processing
For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).
Fast multi-line FASTA/Q reader in several programming languages
Deprecated in favour of TopoMetry: https://github.com/davisidarta/topometry
CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
π Tools and databases for analyzing HLA and VDJ genes.
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Rapid fuzzy string matching in Python using various string metrics