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[Simulation capabilities]: COBRApy

Additional simulation capabilities

Status: Open.

#722 In biosimulators/Biosimulators;

· eagmon opened on Apr 2, 2026

Smoldyn wrapper

Additional simulation capabilities

Status: Open.

#721 In biosimulators/Biosimulators;

· eagmon opened on Apr 2, 2026

Submit Smoldyn 2.74

InvalidThis doesn't seem right This doesn't seem right

Validate/submit simulatorValidate a simulation tool or request its submission to the BioSimulators registry Validate a simulation tool or request its submission to the BioSimulators registry

Status: Open.

#713 In biosimulators/Biosimulators;

· ssandrews opened on Jan 22, 2025

Submit MASSpy 0.1.6

InvalidThis doesn't seem right This doesn't seem right

Validate/submit simulatorValidate a simulation tool or request its submission to the BioSimulators registry Validate a simulation tool or request its submission to the BioSimulators registry

Status: Open.

#704 In biosimulators/Biosimulators;

· biosimulators-daemon opened on Oct 24, 2024

When a simulation is running on run.biosimulations.org, the web site claims constant failures

Status: Open.

#697 In biosimulators/Biosimulators;

· luciansmith opened on Sep 23, 2024

Test VCell 7.5.0.127

Approved

Validate/submit simulatorValidate a simulation tool or request its submission to the BioSimulators registry Validate a simulation tool or request its submission to the BioSimulators registry

Validated

Status: Open.

#694 In biosimulators/Biosimulators;

· CodeByDrescher opened on Sep 1, 2024

[Simulation capabilities]: New Smoldyn version

InvalidThis doesn't seem right This doesn't seem right

Validate/submit simulatorValidate a simulation tool or request its submission to the BioSimulators registry Validate a simulation tool or request its submission to the BioSimulators registry

Status: Open.

#670 In biosimulators/Biosimulators;

· ssandrews opened on Feb 25, 2024

[Bug]: plotly display for biomodels 532 is incorrect

bugSomething isn't working Something isn't working

Status: Open.

#644 In biosimulators/Biosimulators;

· luciansmith opened on Jul 27, 2023

Simulator upload timeout for https://api.biosimulations.org/images/refresh

bugSomething isn't working Something isn't working

Status: Open.

#624 In biosimulators/Biosimulators;

· luciansmith opened on Apr 27, 2023

Don't use pip inside setup.py

bugSomething isn't working Something isn't working

Status: Open.

#611 In biosimulators/Biosimulators;

· luciansmith opened on Apr 18, 2023

Post Singularity images to GitHub container registry

future

Status: Open.

#457 In biosimulators/Biosimulators;

· jonrkarr opened on Oct 28, 2021

Dependency Dashboard

Status: Open.

#357 In biosimulators/Biosimulators;

· renovate opened on Aug 30, 2021