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binlu1981/bio_scripts

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Bio_scripts

Practical, reusable scripts for bioinformatics .

sequence tools for FASTA/Q files: fasta2tab, tab2fasta,
 fasta_extract_by_pattern, fasta_common_seqs,
 fasta_locate_motif, fasta_remove_duplicates,
 fastx_translate, fasta_gc_skew.plot ...
util moved to https://github.com/shenwei356/datakit
plot plot scripts: heatmap ...
blast NCBI BLAST+ wrappers
file_formats genbank->gtf, bam2gff, gff2fa ...
enzyme analysis of restrict enzymes
protein Batch compute pI of protein
biology get insert from sanger sequencing result
for_education scripts with detail comments, for education
not_used older version of some scripts

See README in sub derectories.


Copyright (c) 2014-2015, Wei Shen (shenwei356@gmail.com)

MIT License

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Practical, reusable scripts for bioinformatics

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  • Perl 55.1%
  • Python 40.2%
  • R 4.6%
  • Shell 0.1%

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