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add IsobaricWorkflow to TMT workflow #604

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MaLLLiYA wants to merge 10 commits into bigbio:dev_IsobaricWorkflow
base: dev_IsobaricWorkflow
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@MaLLLiYA MaLLLiYA commented Oct 30, 2025

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the bigbio/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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ypriverol and others added 2 commits October 30, 2025 21:43 
Co-authored-by: Julianus Pfeuffer <8102638+jpfeuffer@users.noreply.github.com>
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This tool is not merged into dev yet.
I think you are building containers from dev only.

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I merged it now. You still need new containers.

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I need to build the container, give me the weekend.
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@MaLLLiYA MaLLLiYA changed the base branch from dev to dev_IsobaricWorkflow December 18, 2025 01:53
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