This repository is organized as follows:
Sources:
-
Code: π
data_collection/
Assembly statistics for JGI genomes.
Code: π assembly_stats/
BUSCO completeness assessment for all genomes.
Code: π busco/
Both R and python scripts were used to generate all manuscript figures.
| Figure | Script |
|---|---|
| Fig. 2 | figures/fig2.py |
| Fig. 3 | figures/fig3.R |
| Fig. 4 | figures/fig4.R |
| Fig. 5 | figures/fig5.R |
| Supplementary Fig. 1 | figures/supplementary_fig1.R |
| Supplementary Fig. 2 | figures/supplementary_fig2.R |
| Supplementary Fig. 3 | figures/supplementary_fig3.R |
| Supplementary Fig. 4 | figures/supplementary_fig4.R |
If you use these scripts, please cite this work :
Kroll, E., Zoclanclounon, Y. A. B., Urban, M., Hill, R., & Hammond-Kosack, K. (2026).Progress and disparities in fungal genomics in the long-read era (v1.01). Zenodo. https://zenodo.org/records/21777221