TITLE OF YOUR PAPER GOES HERE

Overview

project
|- README # the top level description of content (this doc)
|- CONTRIBUTING # instructions for how to contribute to your project
|- LICENSE # the license for this project
|
|- submission/
| |- study.Rmd # executable Rmarkdown for this study, if applicable
| |- study.md # Markdown (GitHub) version of the *.Rmd file
| |- study.tex # TeX version of *.Rmd file
| |- study.pdf # PDF version of *.Rmd file
| |- header.tex # LaTeX header file to format pdf version of manuscript
| |- references.bib # BibTeX formatted references
| |- XXXX.csl # csl file to format references for journal XXX
|
|- data # raw and primary data, are not changed once created
| |- references/ # reference files to be used in analysis
| |- raw/ # raw data, will not be altered
| |- mothur/ # mothur processed data
| +- process/ # cleaned data, will not be altered once created;
| # will be committed to repo
|
|- code/ # any programmatic code
|
|- results # all output from workflows and analyses
| |- tables/ # text version of tables to be rendered with kable in R
| |- figures/ # graphs, likely designated for manuscript figures
| +- pictures/ # diagrams, images, and other non-graph graphics
|
|- exploratory/ # exploratory data analysis for study
| |- notebook/ # preliminary analyses
| +- scratch/ # temporary files that can be safely deleted or lost
|
+- Makefile # executable Makefile for this study, if applicable

How to regenerate this repository

Dependencies and locations

Running analysis

git clone https://github.com/SchlossLab/LastName_BriefDescription_Journal_Year.git
make write.paper