CTC

A collection of open source code related to the cell/nucleus segmentation and tracking, motivated by the Cell Tracking Challenge.

Welcome!

You can find here resources relevant to the Cell Tracking Challenge, in particular:

This site is maintained by Vladimir Ulman on behalf of the Organizers

fiji-plugins fiji-plugins Public

Front-end Fiji plugins that make accessible the CTC measures.

Java 1
java-ctcmetrics java-ctcmetrics Public

Java implementation of measures for quantitative evaluation of biomedical tracking in general.

Java 2 1
2021-edition-available-colabs 2021-edition-available-colabs Public

Colab Notebooks implementing training and inference for the methods of several contestants participating in the 2021 CTC edition, in order to fulfill the reusability criteria

Jupyter Notebook 10 1
py-ctcmetrics py-ctcmetrics Public

Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'

Python 28 5
label-fusion-ng label-fusion-ng Public

Generalized Fiji Tool for Automatic Fusion of Segmentation and Tracking Labels

Java
mastodon-ctc mastodon-ctc Public

Forked from mastodon-sc/mastodon-ctc

Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format

Java