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AntonelliLab/raxmlGUI

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RaxmlGUI2

A desktop GUI for RAxML.

Development

This is a an Electron App that was bootstrapped with Create React App.

yarn start will start the Electron app and the React app at the same time.
yarn build will build the React app and package it along the Electron app.

Input formats

RaxmlGUI supports both FASTA and PHYLIP format.

The strict phylip format reserves the first ten characters before each sequence for the name. The relaxed format allows longer name but requires no space within the name to know where it ends.

Examples

Phylip interleaved strict

 5 42
Turkey AAGCTNGGGC ATTTCAGGGT
Salmo gairAAGCCTTGGC AGTGCAGGGT
H. SapiensACCGGTTGGC CGTTCAGGGT
Chimp AAACCCTTGC CGTTACGCTT
Gorilla AAACCCTTGC CGGTACGCTT
GAGCCCGGGC AATACAGGGT AT
GAGCCGTGGC CGGGCACGGT AT
ACAGGTTGGC CGTTCAGGGT AA
AAACCGAGGC CGGGACACTC AT
AAACCATTGC CGGTACGCTT AA

Phylip interleaved relaxed

 5 42
Turkey AAGCTNGGGC ATTTCAGGGT
Salmo_gair AAGCCTTGGC AGTGCAGGGT
H._Sapiens ACCGGTTGGC CGTTCAGGGT
Chimp AAACCCTTGC CGTTACGCTT
Gorilla AAACCCTTGC CGGTACGCTT
GAGCCCGGGC AATACAGGGT AT
GAGCCGTGGC CGGGCACGGT AT
ACAGGTTGGC CGTTCAGGGT AA
AAACCGAGGC CGGGACACTC AT
AAACCATTGC CGGTACGCTT AA

Phylip sequential strict

 5 42
Turkey AAGCTNGGGC ATTTCAGGGT
GAGCCCGGGC AATACAGGGT AT
Salmo gairAAGCCTTGGC AGTGCAGGGT
GAGCCGTGGC CGGGCACGGT AT
H. SapiensACCGGTTGGC CGTTCAGGGT
ACAGGTTGGC CGTTCAGGGT AA
Chimp AAACCCTTGC CGTTACGCTT
AAACCGAGGC CGGGACACTC AT
Gorilla AAACCCTTGC CGGTACGCTT
AAACCATTGC CGGTACGCTT AA

Phylip sequential relaxed

 5 42
Turkey AAGCTNGGGC ATTTCAGGGT
GAGCCCGGGC AATACAGGGT AT
Salmo_gair AAGCCTTGGC AGTGCAGGGT
GAGCCGTGGC CGGGCACGGT AT
H._Sapiens ACCGGTTGGC CGTTCAGGGT
ACAGGTTGGC CGTTCAGGGT AA
Chimp AAACCCTTGC CGTTACGCTT
AAACCGAGGC CGGGACACTC AT
Gorilla AAACCCTTGC CGGTACGCTT
AAACCATTGC CGGTACGCTT AA

MacOS code-signing and notarizing

https://medium.com/@TwitterArchiveEraser/notarize-electron-apps-7a5f988406db https://github.com/electron/electron-notarize https://stackoverflow.com/questions/53112078/how-to-upload-dmg-file-for-notarization-in-xcode/53121755#53121755

Publishing with electron-builder

Need to have a GH_TOKEN in your shell env

Binaries

The binaries for RAxML on MacOS were compiled from this repository: https://github.com/jtklein/standard-RAxML

About

A new graphical interface for RAxML

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AltStyle によって変換されたページ (->オリジナル) /