Turicibacter
| Turicibacter | |
|---|---|
| Turicibacter sp. H121 cells under microscope | |
| Turicibacter sp. H121 colonies | |
| Scientific classification | |
| Domain: | |
| Phylum: | |
| Class: | |
| Order: | |
| Family: | Turicibacteraceae Verbarg et al. 2020
|
| Genus: | Turicibacter Bosshard, Zbinden & Altwegg 2002
|
| Type species | |
| Turicibacter sanguinis Bosshard, Zbinden & Altwegg 2002
| |
| Species [1] | |
| |
Turicibacter is a genus in the Bacillota phylum of bacteria that has most commonly been found in the guts of animals.[2] The genus is named after the city in which it was first isolated from the blood of a human, Zurich (Latin = Turicum), Switzerland.[3]
Phylogeny
[edit ]The position of Turicibacter within the Bacillota could not be resolved using 16S rRNA gene-based analyses. However, it was tentatively placed in the class Bacilli, then the class Erysipelotrichia.[4]
In a tree built using a concatenated protein alignment containing data from two draft Turicibacter genomes, the group was placed at the base of the class Bacilli.[5] Later analyses that also included amino acid sequences predicted by a complete Turicibacter genome came to the same conclusion.[2]
Phylogeny
[edit ]The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[6]
| 16S rRNA based LTP_10_2024[7] [8] [9] | 120 marker proteins based GTDB 09-RS220[10] [11] [12] |
|---|---|
|
Turicibacter
T. bilis Maki & Looft 2022 T. sanguinis Bosshard, Zbinden & Altwegg 2002 | |
T. bilis Maki & Looft 2022
T. sanguinis Bosshard, Zbinden & Altwegg 2002
See also
[edit ]References
[edit ]- ^ a b J.P. Euzéby. "Turicibacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022年09月09日.
- ^ a b Auchtung TA, Holder ME, Gesell JR, Ajami NJ, Duarte RT, Itoh K, Caspi RR, Petrosino JF, Horai R, Zárate-Bladés CR (2016). "Complete Genome Sequence of Turicibacter sp. Strain H121, Isolated from the Feces of a Contaminated Germ-Free Mouse". Genome Announcements. 4 (2): e00114-16. doi:10.1128/genomeA.00114-16. PMC 4807225 . PMID 27013036.
- ^ Bosshard PP, Zbinden R, Altwegg M (2002). "Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, Gram-positive bacterium". International Journal of Systematic and Evolutionary Microbiology. 52: 1263–1266. doi:10.1099/00207713-52-4-1263 . PMID 12148638.
- ^ Bosshard PP. "Genus VIII. Turicibacter Bosshard, Zbinden and Altwegg 2002, 1266VP". In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K, Whitman WB (eds.). Bergey’s manual of systematic bacteriology, 2nd ed. The Firmicutes. Springer. pp. 1314–1315.
- ^ Segata N, Börnigen D, Morgan XC, Huttenhower C (2013). "PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes". Nature Communications. 4: 2304. doi:10.1038/ncomms3304. PMC 3760377 . PMID 23942190.
- ^ Sayers; et al. "Turicibacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022年09月09日.
- ^ "The LTP" . Retrieved 10 December 2024.
- ^ "LTP_all tree in newick format" . Retrieved 10 December 2024.
- ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
- ^ "GTDB release 09-RS220". Genome Taxonomy Database . Retrieved 10 May 2024.
- ^ "bac120_r220.sp_labels". Genome Taxonomy Database . Retrieved 10 May 2024.
- ^ "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2024.