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Syntrophin, alpha 1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SNTA1
Available structures
PDB Ortholog search: PDBe RCSB
List of PDB id codes

1QAV, 1Z86, 1Z87, 2ADZ, 2PDZ, 4HOP

Identifiers
Aliases SNTA1 , LQT12, SNT1, TACIP1, dJ1187J4.5, Syntrophin, alpha 1, syntrophin alpha 1
External IDsOMIM: 601017; MGI: 101772; HomoloGene: 2331; GeneCards: SNTA1; OMA:SNTA1 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr. Chromosome 20 (human) [1]
Band 20q11.21Start33,407,957 bp [1]
End33,443,763 bp [1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr. Chromosome 2 (mouse)[2]
Band 2 H1|2 76.52 cMStart154,218,233 bp [2]
End154,250,019 bp [2]
RNA expression pattern
Bgee
Human Mouse (ortholog)
  • apex of heart

  • muscle of thigh

  • gastrocnemius muscle

  • right auricle

  • left ventricle

  • putamen

  • caudate nucleus

  • nucleus accumbens

  • Amygdala

  • right lobe of thyroid gland
  • muscle of thigh

  • extensor digitorum longus muscle

  • triceps brachii muscle

  • ankle

  • sternocleidomastoid muscle

  • skeletal muscle tissue

  • plantaris muscle

  • medial head of gastrocnemius muscle

  • temporal muscle

  • choroid plexus of fourth ventricle
More reference expression data
BioGPS
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6640

20648

Ensembl

ENSG00000101400

ENSMUSG00000027488

UniProt

Q13424

Q61234

RefSeq (mRNA)

NM_003098

NM_009228

RefSeq (protein)

NP_003089

NP_033254

Location (UCSC)Chr 20: 33.41 – 33.44 Mb Chr 2: 154.22 – 154.25 Mb
PubMed search[3] [4]
Wikidata

Alpha-1-syntrophin is a protein that in humans is encoded by the SNTA1 gene.[5] [6] [7] Alpha-1 syntrophin is a signal transducing adaptor protein and serves as a scaffold for various signaling molecules. Alpha-1 syntrophin contains a PDZ domain, two Pleckstrin homology domain and a 'syntrophin unique' domain.

Function

[edit ]

Dystrophin is a large, rod-like cytoskeletal protein found at the inner surface of muscle fibers. Dystrophin is missing in Duchenne Muscular Dystrophy patients and is present in reduced amounts in Becker Muscular Dystrophy patients. The protein encoded by this gene is a peripheral membrane protein found associated with dystrophin and dystrophin-related proteins. This gene is a member of the syntrophin gene family, which contains at least two other structurally related genes.[7] The PDZ domain of syntrophin-α1(SNTA1), the most abundant isoform in the heart, has been reported to bind to the C-terminal domain of murine cardiac voltage-gated sodium channels (SkM2) causing altering ion channel activity leading to Long QT syndrome.[8] [9]

Interactions

[edit ]

Syntrophin, alpha 1 has been shown to interact with Dystrophin,[5] [10] [11] Nav1.1 [11] and Nav1.5,[11] and Aquaporin 4.[12]

References

[edit ]
  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000101400Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000027488Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ a b Ahn AH, Freener CA, Gussoni E, Yoshida M, Ozawa E, Kunkel LM (Mar 1996). "The three human syntrophin genes are expressed in diverse tissues, have distinct chromosomal locations, and each bind to dystrophin and its relatives". J Biol Chem. 271 (5): 2724–30. doi:10.1074/jbc.271.5.2724 . PMID 8576247.
  6. ^ Castelló A, Brochériou V, Chafey P, Kahn A, Gilgenkrantz H (Jun 1996). "Characterization of the dystrophin-syntrophin interaction using the two-hybrid system in yeast". FEBS Lett. 383 (1–2): 124–8. doi:10.1016/0014-5793(96)00214-1 . PMID 8612778. S2CID 27278535.
  7. ^ a b "Entrez Gene: SNTA1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)".
  8. ^ Wu G, Ai T, Kim JJ, Mohapatra B, Xi Y, Li Z, Abbasi S, Purevjav E, Samani K, Ackerman MJ, Qi M, Moss AJ, Shimizu W, Towbin JA, Cheng J, Vatta M (Aug 2008). "Alpha-1-syntrophin mutation and the long-QT syndrome: a disease of sodium channel disruption". Circ Arrhythmia Electrophysiol. 1 (3): 193–201. doi:10.1161/CIRCEP.108.769224. PMC 2726717 . PMID 19684871.
  9. ^ Hedley PL, Jørgensen P, Schlamowitz S, Wangari R, Moolman-Smook J, Brink PA, Kanters JK, Corfield VA, Christiansen M (2009). "The genetic basis of long QT and short QT syndromes: a mutation update". Human Mutation. 30 (11): 1486–511. doi:10.1002/humu.21106 . PMID 19862833. S2CID 19122696.
  10. ^ Yang B, Jung D, Rafael JA, Chamberlain JS, Campbell KP (Mar 1995). "Identification of alpha-syntrophin binding to syntrophin triplet, dystrophin, and utrophin". J. Biol. Chem. 270 (10): 4975–8. doi:10.1074/jbc.270.10.4975 . PMID 7890602.
  11. ^ a b c Gee SH, Madhavan R, Levinson SR, Caldwell JH, Sealock R, Froehner SC (Jan 1998). "Interaction of muscle and brain sodium channels with multiple members of the syntrophin family of dystrophin-associated proteins". J. Neurosci. 18 (1): 128–37. doi:10.1523/jneurosci.18-01-00128.1998 . PMC 6793384 . PMID 9412493.
  12. ^ Neely JD, Amiry-Moghaddam M, Ottersen OP, Froehner SC, Agre P, Adams ME (November 2001). "Syntrophin-dependent expression and localization of Aquaporin-4 water channel protein". Proc. Natl. Acad. Sci. U.S.A. 98 (24): 14108–13. Bibcode:2001PNAS...9814108N. doi:10.1073/pnas.241508198 . PMC 61176 . PMID 11717465.

Further reading

[edit ]
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