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2025年06月19日 12:20:05 +02:00
readme.md Update readme.md 2025年06月19日 12:20:05 +02:00

Airtrack- plusmaze- Bpod version

Vision

We want to do electrophysiological recordings (Neuropixel) on mice performing the plus maze behavior experiment in the airtrack system (dominiak et al 2018 / Bergmann et al. 2020). the setup should do the beahavior while we record electrophy data, and video data used to monitor eye and whiskers movement.

Changes from version without recording: recording needs better electrical isolation, markers are now above.

people involved

  • Robert Sachev (supervision)
  • Jens Kremkow (supervision)
  • fabio Reeh (master student)

People doing similar things in the lab:

  • Moritz (behavior)
  • Jelte, Mik (neuropixel)
  • Quon
  • Eduardo (lick sensing)

Research roadmap

hardare change (until July):

- past: using arduino, flashlights from below. UV lamps from above
- new lick detection system from workshop (dual lick sensor) : used by Eduardo in another experiment.
- B-opod
- lightniing (marker detection needs more light): 
 - led for mouse feedback (same as before)
 - marker needs light : Infrared lamps (we have experience with it for other behavior).
- Fix the lick detector: Eduardo asked the workshop already

behavior (until september):

  • can the animal move the thing
  • train the animal to get reward.

Experiments (Feburary 2026)

2 batch of 3 animals.

design choices

  • UV lamps on batteries/plugin (noise if not shielded) may be used if infrared does not work.
  • we will try with the big platform, a smaller one might need to be used later
  • headpost chosen (no reason given)
  • use the multichain version of neuropixel

eye/whiskers tracking

  • video data
  • post experiment analysis
  • ML analysis

dependencies

-hardware:

  • Bpop
  • neuropixel
  • software:
    • matlab
    • spikeglx will be used for data analysis
    • video data analysis with sleap