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zellkonverter
This is the released version of zellkonverter; for the devel version, see zellkonverter.
Conversion Between scRNA-seq Objects
Bioconductor version: Release (3.22)
Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.
Author: Luke Zappia [aut, cre] (ORCID: ORCID iD ORCID: 0000-0001-7744-8565 , github: lazappi), Aaron Lun [aut] (ORCID: ORCID iD ORCID: 0000-0002-3564-4813 , github: LTLA), Jack Kamm [ctb] (ORCID: ORCID iD ORCID: 0000-0003-2412-756X , github: jackkamm), Robrecht Cannoodt [ctb] (ORCID: ORCID iD ORCID: 0000-0003-3641-729X , github: rcannood), Gabriel Hoffman [ctb] (ORCID: ORCID iD ORCID: 0000-0002-0957-0224 , github: GabrielHoffman), Marek Cmero [ctb] (ORCID: ORCID iD ORCID: 0000-0001-7783-5530 , github: mcmero)
Maintainer: Luke Zappia <luke at lazappi.id.au>
citation("zellkonverter")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("zellkonverter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("zellkonverter")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.